Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00046
         (510 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    29   0.069
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   0.49 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   0.64 
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          26   0.64 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.0  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   2.6  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       24   3.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   3.4  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   4.5  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.9  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 29.5 bits (63), Expect = 0.069
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 260  NNATKLQEANLEGALNLTREAKHRAVKALNDANHLQNDIAKTDRQL 397
            +N  + +EA +   LNLT EAK +  +A  ++N  ++ + K  R++
Sbjct: 1487 DNRLEEREAQIRKDLNLTNEAKEKVGQAQLNSNEAKSQVDKAMREV 1532


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 365  QNDIAKTDRQLKNTDRLIEMQYGNFNTTQNVNDKKLTQMQEQVDRL 502
            +  +   + QL+N D L + +   +N T+N   +  TQ Q Q +RL
Sbjct: 1034 EQGVLADNAQLRNADVLRQERLRRYNETRNAARRAATQ-QRQAERL 1078


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
 Frame = +2

Query: 125  KNRTKNKKQQQASK*CDSQNKSRKRHFGWYKKRNR*IKIESYRLGNNATKLQEANLEGAL 304
            K + K  K++  S+    + K++        K+N  +K+E  +  N  TK++  N +G  
Sbjct: 870  KQQIKQHKEKMNSQ--SKELKAKYHQRDKLLKQNDELKLEIKKKENEITKVRNENKDGYD 927

Query: 305  NLT-REAKHRAV---KALNDANHLQNDIAKTDRQLKNTDRLIEMQYGNFNTTQNVNDKKL 472
             ++  E K+  +   K      + + D  K D Q +   +L ++Q      ++NVN K +
Sbjct: 928  RISGMEQKYPWIPEDKEFFGVKNTRYDYNKEDPQ-EAGRKLKKLQDSKDKMSRNVNQKAM 986

Query: 473  TQMQEQVDR 499
              ++ + ++
Sbjct: 987  VLLEREEEQ 995


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 105 NIQKLITKTEQKIKNSNRHLNDVTAK 182
           N +K I + E+K+KN+NR L+ V  K
Sbjct: 61  NHKKKIERDEEKLKNNNRDLSLVKMK 86


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 380 KTDRQLKNTDRLIEMQYGNFNTTQNVNDKKLTQMQEQVDRL 502
           K D   KN DR  E      N+   V   K+  + +Q+D+L
Sbjct: 872 KADAMQKNVDRYTEQINEITNSKVKVLQTKINGLGKQIDKL 912


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 19/107 (17%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
 Frame = +2

Query: 209 WYKKRNR*IKIESYRLGNNATK-LQEANLEGALNLT----REAKHRAVKALNDANHLQND 373
           W +K    +K++  ++     + +++   +G L       R  ++R   ++ND    + +
Sbjct: 679 WDEKHMAQLKLQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKKN 738

Query: 374 IAKTDRQLKNTDRLIEM---QYGNFNTTQNVNDKKLTQMQEQVDRLE 505
           I + DRQL++  R ++    +           D K+  ++E ++ +E
Sbjct: 739 INEYDRQLEDFTRELDQIGPKISEIERRMQQRDMKIQDIKESMNNVE 785


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 41  KHYPKRKRRTINHP*FIIQYNKH--TKTYHKNR 133
           +H  KR+ RT+N    ++  +KH   K +H ++
Sbjct: 575 RHRTKRQSRTVNFNAIVVPESKHIPLKVFHVDK 607


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
 Frame = +2

Query: 101  NKHTKTYHKNRTKNKKQQQASK*CDSQNKSRKRHFGWYKKRNR*IKIESYRLGNNATKLQ 280
            +K  +  H  +T +K +QQA K      + RKR            + E+   G    + +
Sbjct: 845  DKEQQARHDLQTNHKVKQQALKRSTESMEERKRTRVALSAALEQARQEASEKGERPDESE 904

Query: 281  E----ANLEGALNLTREAKHRAVKALNDANHLQNDIAKTDRQLKNTDRLIEMQYGNFNTT 448
            +      L+G ++ T E + R V A  D   L++ + + + + +  D LI       + T
Sbjct: 905  QIPSVEQLKGKIH-TTEKRIRLVSATQD--KLEDVVEELEGKNRERDELIRYSTALRDLT 961

Query: 449  QNVND 463
            Q + D
Sbjct: 962  QMMRD 966


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +2

Query: 293  EGALNLTREAKHRAVKALNDANHLQNDIAKTDRQLKNTDRLIEMQYGNFNTTQ 451
            E A   TR  + +  + ++D +  Q   +K    +   DR+I       NT+Q
Sbjct: 1567 ESAKGTTRRERSKQGRKVSDQSSSQTSPSKRKDSVTKRDRIILQDESEPNTSQ 1619


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 9   DEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITK---TEQKIKNSNRHLNDVTA 179
           D++  +   IEN I   KE Q    +L     ++Q+ ++K   T+ K+K   +   ++TA
Sbjct: 629 DKIRNQRGQIENSI---KELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTA 685

Query: 180 KI 185
           ++
Sbjct: 686 RL 687


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,405
Number of Sequences: 2352
Number of extensions: 6922
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46091631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)