Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00046
(510 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10500.1 68418.m01216 kinase interacting family protein simil... 31 0.45
At3g22450.1 68416.m02837 expressed protein ; expression supporte... 30 0.79
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea... 30 0.79
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 29 1.4
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain... 29 1.4
At4g30350.1 68417.m04313 heat shock protein-related contains sim... 29 1.8
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 29 1.8
At5g38190.1 68418.m04602 myosin heavy chain-related 29 2.4
At2g37370.1 68415.m04583 hypothetical protein 29 2.4
At5g13130.1 68418.m01504 hypothetical protein low similarity to ... 28 3.2
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 28 3.2
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil... 28 4.2
At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containi... 27 5.5
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 27 5.5
At4g20860.1 68417.m03026 FAD-binding domain-containing protein s... 27 5.5
At1g37000.1 68414.m04612 hypothetical protein 27 5.5
At5g55820.1 68418.m06956 expressed protein 27 7.3
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas... 27 7.3
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 27 9.7
At5g27330.1 68418.m03263 expressed protein 27 9.7
At3g13000.2 68416.m01620 expressed protein contains Pfam profile... 27 9.7
At3g13000.1 68416.m01619 expressed protein contains Pfam profile... 27 9.7
At1g69730.1 68414.m08024 protein kinase family protein contains ... 27 9.7
>At5g10500.1 68418.m01216 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 848
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 9 DEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSN 155
DE+ + + I REK + +L N ++KL+ +TE K+KN N
Sbjct: 539 DELFLQKLLAHGIEGREKHLLTEYTKVLRNYKEVKKLLHETETKLKNVN 587
>At3g22450.1 68416.m02837 expressed protein ; expression supported
by MPSS
Length = 311
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 98 YNKHTKTYHKNRTKNKKQQQASK*CDSQNKSRKRHFGWYKKRN 226
Y+ H K HKN K + Q++ +K NK R YKKRN
Sbjct: 125 YDFHRKNQHKNAKKEQNQEEETK-IKKDNKKEVR--DEYKKRN 164
>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
chain, nonmuscle type B (Cellular myosin heavy chain,
type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
(Swiss-Prot:Q27991) [Bos taurus]; contains 1
transmembrane domain
Length = 627
Score = 30.3 bits (65), Expect = 0.79
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +3
Query: 9 DEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTA 179
++ T +L + ++Q+ + S +++S + +++ + EQK+KN++ L V A
Sbjct: 280 EDCTVQLEAKDLLVQKLEGTISENSEIVSEVLTLREYVKSAEQKLKNTDLELKSVNA 336
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 9 DEMTTKLMTIENIIQREKEGQSTIPDLLS----NITNIQKLITKTEQKIKNSNRHLNDVT 176
+++T ++ E+++ KE ++ + + S +I+++I E+K +N N H+ND+
Sbjct: 384 NQLTVEVEKAESLVSSLKEEENMVMEKASAGGKEKEHIEEMIRDHEKKQRNMNAHINDL- 442
Query: 177 AKINLGNVTLDGIRKETDKLKS 242
K VT G K + L++
Sbjct: 443 KKHQTNKVTAFGGDKVINLLRA 464
>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 317
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 36 IENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSN 155
I+ +R E + + DL++ TN+ KL+ K + +IKN++
Sbjct: 268 IKKKCERVTEMEKELHDLMNKHTNVSKLLEKEKLEIKNAS 307
>At4g30350.1 68417.m04313 heat shock protein-related contains
similarity to heat shock protein 101 [Triticum aestivum]
gi|6013196|gb|AAF01280
Length = 924
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 365 QNDIAKTDRQLKNTDRLIEMQYGNFNTTQNVNDKKLTQMQEQVD 496
+ND+AK ++ L +R + Q+ + DKKLT+ Q+ V+
Sbjct: 445 ENDVAKVEKDLTGDNRSVLPQWLQNAKANDDGDKKLTKDQQIVE 488
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/61 (19%), Positives = 30/61 (49%)
Frame = +3
Query: 9 DEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKIN 188
+E+ K E ++ +E+E T+ ++L I + + + +K+ N N L + + +
Sbjct: 931 EEIQNKFKETEALLIKEREAAKTVSEVLPIIKEVPVVDQELMEKLTNENEKLKGMVSSLE 990
Query: 189 L 191
+
Sbjct: 991 I 991
>At5g38190.1 68418.m04602 myosin heavy chain-related
Length = 969
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 96 NITNIQKLITKTEQKIKNSNRHLNDVTAKINLGNVTLDGIRKETDKLKSK 245
N+ + ++ I E K+KN+ R + D + G L ++KET LK++
Sbjct: 515 NLRSAREKILVLEGKLKNAERTIADNNQQAKAGLEELKALKKETVVLKAE 564
>At2g37370.1 68415.m04583 hypothetical protein
Length = 697
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/91 (19%), Positives = 42/91 (46%)
Frame = +2
Query: 233 IKIESYRLGNNATKLQEANLEGALNLTREAKHRAVKALNDANHLQNDIAKTDRQLKNTDR 412
+K+ S L N+ +K ++ ++ + + EA V + L+ D+A ++L+
Sbjct: 305 LKVLSESLLNSTSKAEKRIMDHSRSQKEEALSYRVSKTTEVGQLEKDVAAELKKLEILKE 364
Query: 413 LIEMQYGNFNTTQNVNDKKLTQMQEQVDRLE 505
+E + NT+ +L QE+ ++ +
Sbjct: 365 DLEAELKRVNTSITSARARLRNAQEEREQFD 395
>At5g13130.1 68418.m01504 hypothetical protein low similarity to
microrchidia [Mus musculus] GI:5410255
Length = 706
Score = 28.3 bits (60), Expect = 3.2
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +3
Query: 3 DFDEMTTKLMTIENIIQREKEGQSTIPDLLSNITNIQKLITKTE--QKIKNSNRHLNDVT 176
+ E K+ +E QREKE L + IQ L + E I R DVT
Sbjct: 619 ELQESKAKIQNLEKA-QREKEVLEL--QLKESKARIQNLENRQEGVSTIFQQERARRDVT 675
Query: 177 A-----KINLGNVTLDGIRKETDKLKSKAI 251
K+ + +DG+RK+ D K K I
Sbjct: 676 EDGLRKKLREASDVIDGLRKQVDTFKGKRI 705
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/88 (21%), Positives = 43/88 (48%)
Frame = +2
Query: 113 KTYHKNRTKNKKQQQASK*CDSQNKSRKRHFGWYKKRNR*IKIESYRLGNNATKLQEANL 292
+ Y + + K +++A + + N+ K + ++NR + ++ ++ + L E +L
Sbjct: 816 RVYEETQLKTA-EKEAEERLELSNQLAKLKYQLEYEQNRDVGSRIRKIESSISSL-ETDL 873
Query: 293 EGALNLTREAKHRAVKALNDANHLQNDI 376
EG E K AVK N+ N+ + ++
Sbjct: 874 EGIQKTMSERKETAVKITNEINNWKKEM 901
>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
similarity to HMG I/Y like protein [Glycine max]
GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
GI:20502966; contains Pfam profiles PF00538: linker
histone H1 and H5 family, PF02178: AT hook motif
Length = 479
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 233 IKIESYRLGNNATKLQEANLEGALNLTREAKHRAVKALNDANHLQND 373
+K E GN A +LEG T E KH L D HL+ +
Sbjct: 414 LKSEIGGSGNQAVVQAIQDLEGIAETTNEPKHMEEVQLPDEEHLETE 460
>At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 686
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +3
Query: 57 EKEGQSTIPDLLSNITNIQKLITKTEQ------KIKNSNRHLNDVTAKINLGNVTLDGIR 218
E+EG P+ +N+ E+ K+KN N+ L+ T + +G + G
Sbjct: 478 EEEGHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRN 537
Query: 219 KETDKLKSKAID*ETTP 269
+E + L ++ D E P
Sbjct: 538 REAESLMAEMFDSEVKP 554
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 138 KIKNSNRHLNDVTAKINLGNVTLDGIRKETDKLKSK 245
KIK S +D+ ++ L LDG++KE + ++
Sbjct: 229 KIKESMGQKDDIQGQVKLMGAGLDGVKKERQAISAR 264
>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
simlar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 530
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 6 FDEMTTKLMTIENI---IQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHL 164
F E T LM E + I + E +S P N+ NIQ ++ +++ N+H+
Sbjct: 394 FLEQDTPLMIFEPLGGKISKISETESPYPHRRGNLYNIQYMVKWKVNEVEEMNKHV 449
>At1g37000.1 68414.m04612 hypothetical protein
Length = 219
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 508 SFKSIYLFLHLGKFFIIYILSS 443
S +IYLF+ LG ++Y+L+S
Sbjct: 183 SISTIYLFVALGNVLLVYVLNS 204
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 27.1 bits (57), Expect = 7.3
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +2
Query: 104 KHTKTYHKNRTKNKKQQQASK*CDSQNKSRKRHFGWYKKRNR*IKIESYRLGNNATKLQE 283
K + K + KK+++ K + + RKR KR + K + R+ + + +E
Sbjct: 1575 KEAEMAWKQEMEKKKKEEERKRKEFEMADRKRQREEEDKRLKEAK-KRQRIADFQRQQRE 1633
Query: 284 AN--LEGALNLTREAKHRAVKALNDANHLQNDIAKT 385
A+ L+ L R+A +KA + QN+ KT
Sbjct: 1634 ADEKLQAEKELKRQAMDARIKAQKELKEDQNNAEKT 1669
>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
reticulum-type (ECA2) nearly identical to SP|O23087
Calcium-transporting ATPase 2, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1054
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 278 QEANLEGALNLTREAKHRAVKALNDANHLQN 370
QE+N E AL +E + + K L D N L N
Sbjct: 116 QESNAEKALEALKEMQCESAKVLRDGNVLPN 146
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/83 (21%), Positives = 34/83 (40%)
Frame = +2
Query: 257 GNNATKLQEANLEGALNLTREAKHRAVKALNDANHLQNDIAKTDRQLKNTDRLIEMQYGN 436
G+ + EA E N+ + K A+K N+A + + ++K ++ +++
Sbjct: 171 GDKGDDVDEA--EKVENVDEDDKEEALKEKNEAELAEEEETNKGEEVKEANKEDDVEADT 228
Query: 437 FNTTQNVNDKKLTQMQEQVDRLE 505
V DKK E D+ E
Sbjct: 229 KVAEPEVEDKKTESKDENEDKEE 251
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 278 QEANLEGALNLTREAKHRAVKALNDANHLQNDIAKTD---RQLKNTDRLIEMQYGNFNTT 448
QEA + L E KH + D N + K + QLK+ L+E++ N
Sbjct: 387 QEAEIVELSKLAGEQKHAVAQLRKDYNDQIKNGEKLNCNVSQLKDALALVEVERDNAGKA 446
Query: 449 QNVNDKKLTQMQEQVDRLE 505
+ + + ++E+V LE
Sbjct: 447 LDEEKRNMVALKEKVVALE 465
>At3g13000.2 68416.m01620 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 582
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 84 DLLSNITNIQKLITKTEQKIKNSNRHLN 167
+LLSNI ++ +TK EQ++ + N L+
Sbjct: 96 ELLSNIVTLETAVTKLEQEMMSLNFQLS 123
>At3g13000.1 68416.m01619 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 553
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 84 DLLSNITNIQKLITKTEQKIKNSNRHLN 167
+LLSNI ++ +TK EQ++ + N L+
Sbjct: 67 ELLSNIVTLETAVTKLEQEMMSLNFQLS 94
>At1g69730.1 68414.m08024 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 792
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 64 SFSLWIMFSMVINFVVISS 8
SFSLWI+FS+ + F++ S+
Sbjct: 6 SFSLWILFSLQLCFILDSA 24
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,888,514
Number of Sequences: 28952
Number of extensions: 142909
Number of successful extensions: 510
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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