Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00045
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.3  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   3.3  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   5.8  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   5.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.6  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 509  INRFSNKIRRLHNVLWKQFIF*FDAWIRSLKELGLWC*RSP 387
            +NRFSN + ++  V+   F+F F   I+ L  LG+ C  +P
Sbjct: 1004 LNRFSNDVYKVDEVVSLTFMFFFRNSIQVLFILGVICYSAP 1044


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 285 PQPYHKSGQIILGKPME---HPVPLDQQMIQTKPHVTRRPSTPQPQFFQTSNPRVKL 446
           P+   ++ QI+  K +    +PVP   +++Q+ PH    P TP      + N   KL
Sbjct: 102 PKTPKRTIQIVTPKSLNRTCNPVPFATRLLQSTPHRQLFPPTPSTPSTPSYNSTAKL 158


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 357 QMIQTKPHVTRRPSTPQPQFFQT 425
           +++QTKP  T  P TP  +F  T
Sbjct: 462 EVVQTKPFATSTPDTPLKEFTTT 484


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 487 SEDFITFCGSNSFSSLTRGLEV*----KNWGCGVEGLLVTC 377
           +EDF  F  + ++S +  G E      +N+GCG++  L+ C
Sbjct: 301 AEDFQEFTSNKTYSIIITGYETVCTYLRNYGCGIDIDLLIC 341


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 142 ANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQITLPGVMTRLLNIAYHNRIT 300
           ++ K  PN   + V+ +     +  ++  +KS+  +P  +TRL  +   NR+T
Sbjct: 107 SSKKKRPNETDISVEGVVTRVHERHISVALKSEEDIPSSVTRLSVVKLVNRVT 159


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 127 LSIITANNKHGPNNMHLPVQTLSVGQSDIIVNQ----VVKSQITLPG 255
           +++I ANN +GP      +  +++G+    +NQ    +++ +ITL G
Sbjct: 196 VTVIRANNVYGPRQYEEKLIPMTLGKLKKFINQKSQKIMQDKITLHG 242


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 509  INRFSNKIRRLHNVLWKQFIF*FDAWIRSLKELGLWC*RSP 387
            +NRFS+ + R+  V+ + F+F F    + +  L + C  SP
Sbjct: 1002 LNRFSSDVYRVDEVISRVFMFFFRNLFQIVFVLAVICYSSP 1042


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 55  NKPTFGQIHQHLLKNDPNPTQQTPLSIITANNKH 156
           N P+  +++++ L ++ N T  TPL  I  NN+H
Sbjct: 174 NDPSQERVNEYSLPSNSNSTYTTPLQSI--NNEH 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,763
Number of Sequences: 5004
Number of extensions: 58013
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)