Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00045
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0029 - 10344787-10344828,10345474-10345564,10346234-103462... 34 0.12
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 31 1.1
05_03_0039 - 7621613-7622695 30 1.5
11_06_0679 - 26227654-26227770,26234067-26236217 30 2.0
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 30 2.0
06_03_1181 - 28227746-28229115,28229130-28229307 30 2.0
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 3.4
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 29 3.4
03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542... 29 4.5
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 4.5
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 7.9
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 28 7.9
02_03_0144 + 15694766-15694883,15694980-15697612 28 7.9
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125... 28 7.9
>01_02_0029 -
10344787-10344828,10345474-10345564,10346234-10346295,
10346531-10346690,10347641-10347948
Length = 220
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 252 RSNDAIAQHSIPQPYHKSGQIILGKPMEHPVPL 350
RS+ H +P PY S Q++ G P+ HP+PL
Sbjct: 14 RSSAPFIAHCLPLPYLCSVQVVPGIPVSHPLPL 46
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 291 PYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTPQ 407
PY +++ G P +P P +++ + P +T PS P+
Sbjct: 480 PYPSPPEVVPGPPEINPYPSPPEIVPSPPEITPYPSPPE 518
>05_03_0039 - 7621613-7622695
Length = 360
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 285 PQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPS-TPQPQFFQTSNPRVKLENE 455
P+P+ + KP+ HP P + + KPH +P P+P+ P+ E E
Sbjct: 174 PKPHPEPKPEPKPKPVPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHPEPE 231
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 285 PQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTPQPQFFQTSNPRVKLENELLP 464
P P H+S +P P P + +TKP + P P P+ P K E + P
Sbjct: 66 PHPKHESKPEPKPEPKPEPKPYPEPKPETKPELKPEPK-PNPEPKPEPKPEPKPEPKPYP 124
Query: 465 Q 467
+
Sbjct: 125 E 125
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 270 AQHSIPQPYHKSGQ--IILGKPMEHPVPLDQ-QMIQTKPHVTRRPSTPQPQFFQTSNPRV 440
+Q+ IP H S Q I + + + V Q Q+ QT P + + PQP Q++ PR
Sbjct: 159 SQNQIPIQTHISFQPHIPIQTQIPNQVQYPQTQLHQTHPVLPNQIQIPQPHILQSNIPRT 218
Query: 441 KLENELLPQ 467
+L PQ
Sbjct: 219 QLPQNDTPQ 227
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +3
Query: 267 IAQHSIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPST-PQPQFFQTSNPRVK 443
+ Q +PQ Q+ P P Q Q P + P PQPQ Q P+ +
Sbjct: 224 LQQPQLPQQLQPQSQL---PPQPQQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQAE 280
Query: 444 LENELLPQ 467
L+++ PQ
Sbjct: 281 LQSQSQPQ 288
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 270 AQHSIPQPYHKSGQIILGKPMEHP--VPLDQ-QMIQTKPHVTRRPSTPQPQFFQTSNPRV 440
+Q+ IP H S Q + ++P V Q Q+ QT P + + PQP Q++ PR
Sbjct: 134 SQNQIPIQTHISFQPHIPIQTQNPNQVQYPQTQLHQTHPVLPNQIQIPQPHILQSNIPRT 193
Query: 441 KLENELLPQ 467
+L PQ
Sbjct: 194 QLPQNDTPQ 202
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 4 TSAPNVPPMKTF-SPPHINKPT 66
T P VPP K + SPP INKPT
Sbjct: 344 TVNPVVPPEKRYISPPRINKPT 365
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 306 GQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTPQPQFFQTSNPRVKLENELLPQNVMK 479
GQ+ +G PM P P + KP + P+T P + N +K NELL Q++ K
Sbjct: 786 GQMQMGMPMFSPSPPSK-----KP--SPPPATASPLIGKVDNDGLKKTNELLNQDISK 836
>03_05_0903 -
28652447-28653346,28653890-28654056,28654075-28654264,
28654916-28655210,28655514-28655760,28656017-28656443
Length = 741
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 642 WNYHHIRLSIFARH*RSRIIGLNPLSTTIESGLNPVFIAGGRVEDQQ 502
+NY H L + G +P +T++S NPV IAG + D++
Sbjct: 474 FNYDHEHLGTGPQTLVEIAEGRHPFCSTLQSAKNPVIIAGAGLFDRE 520
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +3
Query: 222 PSGQKSNHSTRSN--DAIAQHSIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRP 395
P+G S+ +T+ N + +HS + + + +P P PL + P P
Sbjct: 378 PNGVFSSRATKDNIEQKLEEHSTNKRQKLQNDVYVSRPQSPPPPLPSDAFEQPPPPPEHP 437
Query: 396 STPQ 407
P+
Sbjct: 438 PPPE 441
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 109 PTQQTPLSIITANNKHGPNNMHLPVQTLS 195
P QQT ++++N+ P N H+P Q S
Sbjct: 626 PLQQTRKDVVSSNHSSKPINPHIPSQVKS 654
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/51 (23%), Positives = 21/51 (41%)
Frame = +3
Query: 285 PQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTPQPQFFQTSNPR 437
PQP + P +HP + +P+ R+P+TP + P+
Sbjct: 94 PQPSATATAAASPSPSQHPNNQNHSSTVVQPYAPRQPATPAGSIIVATQPK 144
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 13 PNVPPMKTFSPPH-INKPTFGQIHQHLLKN 99
P+ PP FSPPH FG + H+ N
Sbjct: 671 PSYPPRNQFSPPHSCTHCHFGHVETHMPHN 700
>01_02_0110 +
11210174-11210292,11211635-11211752,11212426-11212522,
11212991-11213080,11213174-11213280,11213765-11213887,
11214055-11214208,11214582-11214642,11214748-11215103,
11216535-11218056,11218169-11218415
Length = 997
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 345 EQGVP*ASPKLFDRICDTVV 286
E G+P SPKL +RIC+ VV
Sbjct: 799 EFGIPLFSPKLCERICERVV 818
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,433
Number of Sequences: 37544
Number of extensions: 373213
Number of successful extensions: 977
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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