Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00045
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.37 
SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.37 
SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)                   31   0.65 
SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_56554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               29   3.5  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   4.6  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   4.6  
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)             29   4.6  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   28   6.0  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +1

Query: 67  FGQIHQHLLKNDPNPTQQTPLSIITANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQIT 246
           +GQ    +++  PN  Q  PL  + AN +   NN     Q L  G      ++  K++  
Sbjct: 24  YGQSQSQIVEQ-PNEVQNPPLQPLQANQQVPQNNQQANKQQLDKGGKAPAPSKAKKTESF 82

Query: 247 LPGVMTRLLN--IAYHNRI-TNPVK*FWGSLWNTL 342
                T L+N  ++YH R+ +   + +W  L + L
Sbjct: 83  EKEEETYLINLWVSYHERLESKDSRKYWAKLVDEL 117


>SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +1

Query: 67  FGQIHQHLLKNDPNPTQQTPLSIITANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQIT 246
           +GQ    +++  PN  Q  PL  + AN +   NN     Q L  G      ++  K++  
Sbjct: 24  YGQSQSQIVEQ-PNEVQNPPLQPLQANQQVPQNNQQANKQQLDKGGKAPAPSKAKKTESF 82

Query: 247 LPGVMTRLLN--IAYHNRI-TNPVK*FWGSLWNTL 342
                T L+N  ++YH R+ +   + +W  L + L
Sbjct: 83  EKEEETYLINLWVSYHERLESKDSRKYWAKLVDEL 117


>SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)
          Length = 292

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 297 HKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTP 404
           H  G++ L +    P+PL    IQTKPH     S+P
Sbjct: 121 HPLGEVTLTEEFRQPLPLASTTIQTKPHPDFSISSP 156


>SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +3

Query: 231 QKSNHSTRSNDAIAQ---HSI-PQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPS 398
           QK  H  +    I Q   H+I PQ   +  QII     EHP   +Q M     HVT +P+
Sbjct: 320 QKKIHQRQQQKQIHQSLGHTILPQATGQPTQIISKSQSEHPRH-NQPM-----HVTLKPA 373

Query: 399 TPQPQFFQTSNPRVKLENELLP 464
               QF+Q S P   L+    P
Sbjct: 374 QGPAQFYQPSPPHPSLQGSAPP 395


>SB_56554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 16  NVPPMKTFSPPHINKPTFGQIHQHL--LKNDPNPTQQTPLSIITANNKHGPNNMHLP 180
           N+  +K FS P  N P   +I   +  LKN   P + TPL    ++N     N   P
Sbjct: 216 NIQVLKNFSQPTHNTPLEYEISDKIQVLKNFSQPNRDTPLEYEVSDNIQVLKNFRQP 272



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 16  NVPPMKTFSPPHINKPTFGQIHQHL--LKNDPNPTQQTPLSIITANNKHGPNNMHLP 180
           N+  +K F  P  N P   +I  ++  LKN   PT  TPL    ++N     N   P
Sbjct: 262 NIQVLKNFRQPTHNTPLEYEISDNIQVLKNFSQPTHDTPLEYEISDNIQVLKNFSQP 318


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 KSGQIILGKPMEHPVPLDQQMIQTKPHVTRRP-STPQPQFFQTSNPRVKL 446
           +S  I  G PM HP PLD  +    P     P  TP       ++PR+ L
Sbjct: 273 RSRTIAPGSPM-HPTPLDTLVTDNSPRFANAPHPTPLGTLVTNNSPRLAL 321


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 7   SAPNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNP 111
           S P  PPM    PP  NKPTFG  +     N P P
Sbjct: 164 SFPPPPPMGKPPPPSGNKPTFG--NSRTSTNGPPP 196


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 7   SAPNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNP 111
           S P  PPM    PP  NKPTFG  +     N P P
Sbjct: 76  SFPPPPPMGKPPPPSGNKPTFG--NSRTSTNGPPP 108


>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
          Length = 479

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/82 (23%), Positives = 31/82 (37%)
 Frame = +3

Query: 222 PSGQKSNHSTRSNDAIAQHSIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPST 401
           P  Q S  S+ +   +   + P P    G    G PM+ P P +  +   + H  + P  
Sbjct: 103 PLSQPSPASSATPTRVPDSTSPTPAQADGLRHRGTPMQTPSPFNYPLGLPQMHFMQHPQH 162

Query: 402 PQPQFFQTSNPRVKLENELLPQ 467
               F    +P     ++ LPQ
Sbjct: 163 VGLTFATPPSPTTPPVDQQLPQ 184


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 82  QHLLKNDPNPTQQTPLSIITANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQI 243
           +HL+KN  N T++   S +  + +  P  MH  ++  SV +SD  ++++   +I
Sbjct: 199 KHLVKNVSNATEKNHFSSMCKSKEVPPKQMH-DLEKDSVSESDDSIDELFFGEI 251


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 663  HSCLLFCWNYHHIRLSIFARH*RSRIIGLN 574
            H   L   + HH RLS+ + H RSR++GL+
Sbjct: 1893 HHARLSVLSIHHARLSVLSIH-RSRLVGLS 1921


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +3

Query: 237 SNHSTRSNDAIAQHSIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTPQPQ 413
           SN  TR      +H  P P    G+    K     +P   Q   + PH +   S+P PQ
Sbjct: 246 SNPPTRRGPPRQEHPPPPPPGSRGR---AKTQLQLIPRSLQKTSSTPHTSSSTSSPDPQ 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,732,370
Number of Sequences: 59808
Number of extensions: 452045
Number of successful extensions: 1240
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)