Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00045
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 36 0.027
U64845-3|AAC48032.2| 312|Caenorhabditis elegans Hypothetical pr... 31 0.76
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 31 0.76
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 31 0.76
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 31 0.76
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 31 0.76
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.0
Z81057-1|CAB02914.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.3
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 5.3
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 333 EHPVPLDQQMIQTKPHVTRRPSTPQPQFFQTSNPRVKLENELLPQNVMKSSDFI 494
+ P P Q M P R PS P+ F+ P +K +NE+ + +++ D I
Sbjct: 202 QQPPPPQQPMQAVAPAPPRSPSPPRKSMFENLPPEMKEKNEMFRKEILRRLDII 255
>U64845-3|AAC48032.2| 312|Caenorhabditis elegans Hypothetical
protein F45F2.11 protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 375 PHVTRRPSTPQPQFFQTSNPRVKLENELLP 464
P + RRP P PQFF +P E LP
Sbjct: 222 PRIARRPPIPPPQFFFPPSPHFSREPHSLP 251
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 31.1 bits (67), Expect = 0.76
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 279 SIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTR-RPSTPQPQFFQTSNPRVKLENE 455
S P+P +S +I GKPM P+ + ++T+ +R +TP Q T +P V E +
Sbjct: 251 STPKPSRQSEDVIDGKPMNQPIL--RSSLRTEASGSRTEEATPVKQSRVTLSPEV--EKK 306
Query: 456 LLPQNVMKS 482
L Q+ KS
Sbjct: 307 LAEQDERKS 315
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 31.1 bits (67), Expect = 0.76
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 279 SIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTR-RPSTPQPQFFQTSNPRVKLENE 455
S P+P +S +I GKPM P+ + ++T+ +R +TP Q T +P V E +
Sbjct: 215 STPKPSRQSEDVIDGKPMNQPIL--RSSLRTEASGSRTEEATPVKQSRVTLSPEV--EKK 270
Query: 456 LLPQNVMKS 482
L Q+ KS
Sbjct: 271 LAEQDERKS 279
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 31.1 bits (67), Expect = 0.76
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 279 SIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTR-RPSTPQPQFFQTSNPRVKLENE 455
S P+P +S +I GKPM P+ + ++T+ +R +TP Q T +P V E +
Sbjct: 251 STPKPSRQSEDVIDGKPMNQPIL--RSSLRTEASGSRTEEATPVKQSRVTLSPEV--EKK 306
Query: 456 LLPQNVMKS 482
L Q+ KS
Sbjct: 307 LAEQDERKS 315
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 31.1 bits (67), Expect = 0.76
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 279 SIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTR-RPSTPQPQFFQTSNPRVKLENE 455
S P+P +S +I GKPM P+ + ++T+ +R +TP Q T +P V E +
Sbjct: 251 STPKPSRQSEDVIDGKPMNQPIL--RSSLRTEASGSRTEEATPVKQSRVTLSPEV--EKK 306
Query: 456 LLPQNVMKS 482
L Q+ KS
Sbjct: 307 LAEQDERKS 315
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 231 QKSNHSTRSNDAIAQHSIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTP 404
+KS +ND ++ S + K + + GKP+E P++ + ++P ++ S P
Sbjct: 12644 EKSTTEKPTNDKTSKKSAEKKTVKPKKEVTGKPLEAKKPVEDKKDASQPSSSKESSPP 12701
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 231 QKSNHSTRSNDAIAQHSIPQPYHKSGQIILGKPMEHPVPLDQQMIQTKPHVTRRPSTP 404
+KS +ND ++ S + K + + GKP+E P++ + ++P ++ S P
Sbjct: 12644 EKSTTEKPTNDKTSKKSAEKKTVKPKKEVTGKPLEAKKPVEDKKDASQPSSSKESSPP 12701
>Z81057-1|CAB02914.2| 460|Caenorhabditis elegans Hypothetical
protein F10D11.2 protein.
Length = 460
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 22 PPMKTFSPPHINKPTFGQ----IHQHLLKNDPNPTQQTPLSIITANNKHGPNNMHLPVQT 189
PP++ I TFGQ ++Q + N+P P P+S H P N+H P++
Sbjct: 140 PPVQEEIEEKIENDTFGQNEVTVNQQPI-NNPMPVYPVPIS-------HEPANLHSPIRN 191
Query: 190 LSV 198
S+
Sbjct: 192 RSI 194
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 321 GKPMEHPVPLDQQMIQTKPHVTRRPSTPQ-PQFFQTSNPRVKL 446
G P + P P QQ Q +P T PQ P + P++++
Sbjct: 195 GYPQQFPAPQRQQQYQPQPQTTNYNQAPQRPLYIPPPPPKLQV 237
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 13 PNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNPTQQ-TPLSIITANNKHGPNNMH 174
P + P + PPH N P + H + P P+Q+ P +A + G N+++
Sbjct: 23 PPMYPYPSAPPPHPNAPMYYPYGHHAPSHAPMPSQKILPPPTTSAPSNSGNNSIN 77
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 13 PNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNPTQQ-TPLSIITANNKHGPNNMH 174
P + P + PPH N P + H + P P+Q+ P +A + G N+++
Sbjct: 84 PPMYPYPSAPPPHPNAPMYYPYGHHAPSHAPMPSQKILPPPTTSAPSNSGNNSIN 138
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 13 PNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNPTQQ-TPLSIITANNKHGPNNMH 174
P + P + PPH N P + H + P P+Q+ P +A + G N+++
Sbjct: 48 PPMYPYPSAPPPHPNAPMYYPYGHHAPSHAPMPSQKILPPPTTSAPSNSGNNSIN 102
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 TSAPNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNPTQQTPLSIITANNKHGPNNMHL-P 180
TS+PNV + PP + T P+Q TP S+ TA + H+ P
Sbjct: 71 TSSPNVQT-QCHQPPVVRSQTHQASVSQTTPTQTTPSQYTPASVSTARAPQFHRSSHVTP 129
Query: 181 VQTLSVGQS 207
Q + Q+
Sbjct: 130 SQQQRIEQA 138
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 TSAPNVPPMKTFSPPHINKPTFGQIHQHLLKNDPNPTQQTPLSIITANNKHGPNNMHL-P 180
TS+PNV + PP + T P+Q TP S+ TA + H+ P
Sbjct: 71 TSSPNVQT-QCHQPPVVRSQTHQASVSQTTPTQTTPSQYTPASVSTARAPQFHRSSHVTP 129
Query: 181 VQTLSVGQS 207
Q + Q+
Sbjct: 130 SQQQRIEQA 138
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 PMEHPVPLDQQMIQTKPHVTRRPSTPQP-QFFQTSNP 434
PM+H + Q Q P + R STPQP Q Q+S P
Sbjct: 729 PMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIP 765
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 PMEHPVPLDQQMIQTKPHVTRRPSTPQP-QFFQTSNP 434
PM+H + Q Q P + R STPQP Q Q+S P
Sbjct: 729 PMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIP 765
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,335
Number of Sequences: 27780
Number of extensions: 332152
Number of successful extensions: 976
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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