Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00045
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr...    30   1.6  
At3g02020.1 68416.m00164 aspartate kinase, lysine-sensitive, put...    29   3.7  
At5g42860.1 68418.m05224 expressed protein                             28   4.9  
At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive near...    28   4.9  
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)...    28   6.5  
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)...    28   6.5  
At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing ...    28   6.5  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   6.5  

>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
           protein 
          Length = 571

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 639 NYHHIRLSIFARH*RSRIIGLNPLSTTIESGLNPVFIAGGRVEDQQIL 496
           +YHH  L     +    ++G+NP +T  E G+  +      V +QQ++
Sbjct: 227 DYHHQALGYLPENGNKEMMGMNPFNTVEEDGIPVIGEPSLLVNEQQVV 274


>At3g02020.1 68416.m00164 aspartate kinase, lysine-sensitive,
           putative similar to aspartate kinase gi:2257743
           (Arabidopsis thaliana)
          Length = 559

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 317 FGEAYGTPCSFRPTNDSNQTTRHKETFNTTAP 412
           FG     P S RP  + N   R K ++N TAP
Sbjct: 342 FGAQVLHPLSMRPAREGNIPVRVKNSYNPTAP 373


>At5g42860.1 68418.m05224 expressed protein
          Length = 320

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +3

Query: 282 IPQPYHKSGQIILGKPMEHPVPLDQQM---IQTKPHVTRRPSTPQPQFFQTSNPRVKLEN 452
           IP+P  K G I++ +P   P P+  ++   ++++ +V  +    QP+F++     +  E+
Sbjct: 245 IPKPKKKKGPIVIVEPPAPPAPVPMRLNFTVRSRAYVLGK--LVQPKFYKRIVCLINFEH 302

Query: 453 ELLPQNV 473
           + L +++
Sbjct: 303 KKLSKHI 309


>At5g14060.1 68418.m01645 aspartate kinase, lysine-sensitive nearly
           identical to gi:2257743
          Length = 544

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 317 FGEAYGTPCSFRPTNDSNQTTRHKETFNTTAP 412
           FG     P S RP  D +   R K ++N TAP
Sbjct: 341 FGAQVLHPLSMRPARDGDIPVRVKNSYNPTAP 372


>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 4   TSAPNVPPMKT--FSPPHINKPTFGQIHQHLLKNDPNPTQQTPLSIITANNKHGPNNM 171
           TS   VPP +   + P H     FG   +    N  N T  TP  II  NN+   NN+
Sbjct: 4   TSTHFVPPRRVGIYEPVH----QFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNV 57


>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 4   TSAPNVPPMKT--FSPPHINKPTFGQIHQHLLKNDPNPTQQTPLSIITANNKHGPNNM 171
           TS   VPP +   + P H     FG   +    N  N T  TP  II  NN+   NN+
Sbjct: 4   TSTHFVPPRRVGIYEPVH----QFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNV 57


>At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427,
           SP|Q9Y4I5 Tesmin (Metallothionein-like 5,
           testis-specific) {Homo sapiens}; contains Pfam profile
           PF03638: Tesmin/TSO1-like CXC domain
          Length = 603

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 ILGKPMEHPVPLDQQMIQTKPHVTRRPSTPQ 407
           I+  P+ HP+P   +    +P+V  R  TPQ
Sbjct: 99  IVNAPIRHPIPESPKARGPRPNVEGRDGTPQ 129


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   TSAPNVP-PMKTFSPPHINKPTFGQIHQHLLKNDPNPTQQTP 126
           T  P  P P K  +PP++ +P+  +  +      P+P  +TP
Sbjct: 412 TPTPKAPEPKKEINPPNLEEPSKPKPEESPKPQQPSPKPETP 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,012
Number of Sequences: 28952
Number of extensions: 309410
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)