Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00044
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   2e-22
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   5e-18
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   3e-17
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               81   7e-16
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   1e-15
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         77   9e-15
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         75   5e-14
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          73   3e-13
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         57   1e-08
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         39   0.003
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.064
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.085
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.45 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   9.7  
SB_4008| Best HMM Match : Fer4 (HMM E-Value=0.16)                      27   9.7  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  102 bits (245), Expect = 2e-22
 Identities = 47/81 (58%), Positives = 53/81 (65%)
 Frame = +3

Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 443
           G +++GLFG T PKT  NF  LA K +G GYK S FHRVIKNFMIQ             S
Sbjct: 40  GRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYS 99

Query: 444 IYGERFEDENFKLKHYGAGWL 506
           IYG+ F+DENF LKHYG GWL
Sbjct: 100 IYGKYFDDENFNLKHYGPGWL 120



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/47 (76%), Positives = 41/47 (87%)
 Frame = +2

Query: 497 WLVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           WL  MANAGK+TNGSQF+ITT+KT WLDG H  FGKVLEGMDVV++I
Sbjct: 119 WLC-MANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRI 164


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 39/43 (90%), Positives = 42/43 (97%)
 Frame = +2

Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+K+
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKL 43


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 39/43 (90%), Positives = 41/43 (95%)
 Frame = +2

Query: 497 WLVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDV 625
           WL  MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+GM+V
Sbjct: 138 WLS-MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 36/80 (45%), Positives = 46/80 (57%)
 Frame = +3

Query: 333 QKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSW 512
           +  +G GYK S FHRVI++FMIQ            +SIYG++F DENFKL+HYGAGWLS 
Sbjct: 82  ESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSM 141

Query: 513 LMQAKTQMDLNFSSQLLRHP 572
               K      F    ++ P
Sbjct: 142 ANAGKDTNGSQFFITTVKTP 161


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 42/82 (51%), Positives = 47/82 (57%)
 Frame = +3

Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 443
           G IV+ L    VP T ENF  L    +G GYKGS FHR+I  FM Q            +S
Sbjct: 151 GRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKS 210

Query: 444 IYGERFEDENFKLKHYGAGWLS 509
           IYG +FEDENF LKH GAG LS
Sbjct: 211 IYGAKFEDENFVLKHTGAGVLS 232



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 31/43 (72%), Positives = 38/43 (88%)
 Frame = +2

Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           MAN+G +TNGSQFF+TT KT WLDG+HVVFG V+EG DVV+K+
Sbjct: 233 MANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKM 275


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 42/82 (51%), Positives = 46/82 (56%)
 Frame = +3

Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 443
           G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  FM Q            +S
Sbjct: 17  GRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKS 76

Query: 444 IYGERFEDENFKLKHYGAGWLS 509
           IYG +F DENF LKH G G LS
Sbjct: 77  IYGAKFADENFNLKHTGPGILS 98



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +2

Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           ++ MANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+KI
Sbjct: 96  ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKI 141


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 35/46 (76%), Positives = 42/46 (91%)
 Frame = +2

Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           L+ MAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV+++
Sbjct: 194 LLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVREL 239


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = +2

Query: 497 WLVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           + V MANAG +TNGSQFFIT V TPWLD +H VFG+V++GMDV Q+I
Sbjct: 28  YTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDVAQQI 74


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/46 (67%), Positives = 38/46 (82%)
 Frame = +2

Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           ++ MANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+
Sbjct: 2   ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +2

Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVV 628
           +V MAN G+ TNGSQF+IT    PW+D ++V FG+V+EG++V+
Sbjct: 71  VVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGLNVL 113


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = +2

Query: 503 VIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 610
           V MAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 307 VSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = +2

Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
           L+ MAN G +TNGSQFFI           HVVFG V++G ++V++I
Sbjct: 51  LLSMANRGPNTNGSQFFII----------HVVFGHVIQGEELVRQI 86


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 258 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 386
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +3

Query: 258 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 401
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75



 Score = 34.3 bits (75), Expect = 0.085
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +2

Query: 524 KDTNGSQFFITTVKTPWLDGR-----HVVFGKVLEGMDVVQKI 637
           +D+  SQFFI      +LD       + VFGKV++GMDVV KI
Sbjct: 115 RDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +3

Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 377
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 221 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 120
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 221 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 120
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


>SB_4008| Best HMM Match : Fer4 (HMM E-Value=0.16)
          Length = 444

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 LVPNLMKFPKDLKLLIR*ALT*RLVRQY 262
           ++P L +FP     L+  AL  RL+RQY
Sbjct: 141 MIPTLARFPAPYNTLMNNALVKRLLRQY 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,011
Number of Sequences: 59808
Number of extensions: 377335
Number of successful extensions: 696
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)