Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00044
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 295 VFPNNPITIVPILSHQSSC 239
           ++PN  +  VP   +QSSC
Sbjct: 133 IYPNGDVLWVPPAIYQSSC 151


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 505 NQPAP*CFSLKFSSSK 458
           NQ +  CFSLKF + K
Sbjct: 539 NQNSEMCFSLKFKNKK 554


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 494 TIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 342
           ++ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 73  SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 494 TIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 342
           ++ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 111 SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 363 SLCTPPPQVSELVER 319
           S  TPPPQV E+ ++
Sbjct: 685 SATTPPPQVDEVDDK 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,422
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)