Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00043
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 134 9e-32
03_01_0547 + 4093196-4093657,4094267-4095148 134 9e-32
03_01_0544 + 4082528-4082989,4083585-4084466 134 9e-32
03_01_0543 + 4076981-4077442,4078145-4079026 134 9e-32
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 46 2e-05
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 40 0.002
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 40 0.002
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 38 0.011
01_02_0102 - 11148219-11148563,11148650-11149534 31 0.98
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 5.2
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 9.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 134 bits (323), Expect = 9e-32
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFA 413
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK V
Sbjct: 412 FAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 134 bits (323), Expect = 9e-32
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFA 413
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK V
Sbjct: 412 FAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 134 bits (323), Expect = 9e-32
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFA 413
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK V
Sbjct: 412 FAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 134 bits (323), Expect = 9e-32
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMIPTKPMVVETFSEYPPLGRFA 413
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK V
Sbjct: 412 FAVRDMRQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = +1
Query: 7 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IK 165
Q++ L + GY VL H+ C+ ++ E++D + K + K +K
Sbjct: 324 QILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVK 383
Query: 166 SGDAAIVNLVPSKPLCVESFQEFPPLGRFASVT*G 270
+G + + + +C+E+F +FP LGRF T G
Sbjct: 384 NGAVVVCRIQVNNLICIENFSDFPQLGRFTLRTEG 418
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +1
Query: 7 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIV 186
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 187 NLVPSKPLCVESFQEFPPLGR 249
+ P+CV+ F + LGR
Sbjct: 636 QVTLDAPVCVQEFSKCRALGR 656
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +1
Query: 7 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIV 186
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 187 NLVPSKPLCVESFQEFPPLGR 249
+ P+CV+ F + LGR
Sbjct: 636 QVTLDAPVCVQEFSKCRALGR 656
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +1
Query: 82 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 249
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGR 632
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 31.1 bits (67), Expect = 0.98
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -3
Query: 427 FR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRT 254
F+ MK R + N V S S+FLP+V F+A PPP ALM V
Sbjct: 259 FKVMKERMYKIISNAIVVSYSHFLPVVPFNA---FNPPPPEF---ALMKSDPPVVQRRSP 312
Query: 253 QNDRGVGIPGRTLHIEA 203
G G G +H EA
Sbjct: 313 HRQTGQGSGGPKIHFEA 329
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 19 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 162
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 500 MLHYKPCKKYRKGMSL*P-FFPSK 432
M PCKK +KGM++ P FF SK
Sbjct: 661 MSKLNPCKKQKKGMNILPKFFTSK 684
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,904,587
Number of Sequences: 37544
Number of extensions: 339265
Number of successful extensions: 878
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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