Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00043
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                145   3e-35
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           44   2e-04
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                31   1.3  
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            30   2.3  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  145 bits (352), Expect = 3e-35
 Identities = 62/85 (72%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
           TAQVIV+NHPG+I  GY+PVLDCHTAHIACKF ++ EK+DRR+GK  E NPK IK+GDAA
Sbjct: 200 TAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAA 259

Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
           +V ++PSKP+CVE+F EFPPLGRFA
Sbjct: 260 MVEMIPSKPMCVETFTEFPPLGRFA 284



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3

Query: 249 FCVRDMRQTVAVGVIKAVN 305
           F VRDM+QTVAVGVIK+V+
Sbjct: 283 FAVRDMKQTVAVGVIKSVD 301


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 115 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 252
           +D++TGK  +  P+ IK    AI  L     +C+E F +F  +GRF
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRF 541


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +1

Query: 79  HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 207
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 100 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 240
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 178 AIVNLVPSKPLCVESFQEFPPLGRF 252
           A V L  S+P+CVE ++++  LGRF
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRF 64


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 167  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 63
            DL +F  G+T++ LP   ST  +    NLQ  W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 40  SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 207
           +N   P+L+  T  +A        K D  T  + +VN KS   G  +I+    P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,061,463
Number of Sequences: 59808
Number of extensions: 411321
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)