Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00043
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 150 1e-36
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 150 1e-36
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 150 1e-36
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 35 0.054
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 35 0.054
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.2
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.2
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.2
Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical p... 28 8.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 150 bits (363), Expect = 1e-36
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 4 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 183
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 308 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 367
Query: 184 VNLVPSKPLCVESFQEFPPLGRFA 255
V L+P+KPLCVESF ++ PLGRFA
Sbjct: 368 VELIPTKPLCVESFTDYAPLGRFA 391
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK+V
Sbjct: 390 FAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 150 bits (363), Expect = 1e-36
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 4 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 183
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 184 VNLVPSKPLCVESFQEFPPLGRFA 255
V L+P+KPLCVESF ++ PLGRFA
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFA 425
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK+V
Sbjct: 424 FAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 150 bits (363), Expect = 1e-36
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 4 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 183
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 184 VNLVPSKPLCVESFQEFPPLGRFA 255
V L+P+KPLCVESF ++ PLGRFA
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFA 425
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F VRDMRQTVAVGVIK+V
Sbjct: 424 FAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%)
Frame = +1
Query: 4 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 183
A+V+VL H I++GY+ VL +A + +D++TG+ K +K + I
Sbjct: 433 AEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEKCI 490
Query: 184 VNLVPSKPLCVESFQEFPPLGRF 252
+ L +P +E F+E+P LGRF
Sbjct: 491 MRLESPEPFVLEPFKEYPYLGRF 513
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +1
Query: 37 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 216
I G L H+ + C F + +++ G+ + P+ I G +A+V + + +
Sbjct: 500 IIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAI 559
Query: 217 ESFQEFPPLGR 249
E+F LGR
Sbjct: 560 ETFTSCRALGR 570
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +1
Query: 37 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 216
I G L H+ + C F + +++ G+ + P+ I G +A+V + + +
Sbjct: 518 IIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAI 577
Query: 217 ESFQEFPPLGR 249
E+F LGR
Sbjct: 578 ETFTSCRALGR 588
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -3
Query: 418 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 263
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 61 LDCHTAHIACKFAEIKEKVDRRTGKSTE 144
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 61 LDCHTAHIACKFAEIKEKVDRRTGKSTE 144
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 61 LDCHTAHIACKFAEIKEKVDRRTGKSTE 144
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical
protein C50B6.12 protein.
Length = 329
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 646 HFRSLNLSRCKIIQIVLEATFIL*IY-TLVCSHNKMFQIYYV*P 518
+FR NLS C I I+L + + + IY L HN + Q+ +V P
Sbjct: 190 NFRWKNLSYCFIGAIILNSLYSIIIYCALKMRHNLLKQLEHVSP 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,814
Number of Sequences: 27780
Number of extensions: 317995
Number of successful extensions: 825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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