Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00043
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   169   3e-44
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   167   7e-44
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   133   2e-33
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  169 bits (410), Expect = 3e-44
 Identities = 77/85 (90%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
           TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAA
Sbjct: 341 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAA 400

Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
           IV L P+KP+CVE+FQEFPPLGRFA
Sbjct: 401 IVMLQPTKPMCVEAFQEFPPLGRFA 425



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +3

Query: 249 FCVRDMRQTVAVGVIKAVNF 308
           F VRDMRQTVAVGVIK+V F
Sbjct: 424 FAVRDMRQTVAVGVIKSVTF 443


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  167 bits (407), Expect = 7e-44
 Identities = 76/85 (89%), Positives = 80/85 (94%)
 Frame = +1

Query: 1   TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
           TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAA
Sbjct: 341 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAA 400

Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
           IV LVPSKP+C E+FQEFPPLGRFA
Sbjct: 401 IVMLVPSKPMCAEAFQEFPPLGRFA 425



 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +3

Query: 249 FCVRDMRQTVAVGVIKAVNF 308
           F VRDMRQTVAVGVIKAV F
Sbjct: 424 FAVRDMRQTVAVGVIKAVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  133 bits (321), Expect = 2e-33
 Identities = 62/68 (91%), Positives = 64/68 (94%)
 Frame = +1

Query: 1   TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
           TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAA
Sbjct: 52  TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAA 111

Query: 181 IVNLVPSK 204
           IV L P+K
Sbjct: 112 IVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 415 KYRSCMKNCAVNSSSYFLPLVAFS 344
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 415 KYRSCMKNCAVNSSSYFLPLVAFS 344
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 415 KYRSCMKNCAVNSSSYFLPLVAFS 344
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 454 CSPFFLRNTFR*MKYRSCMKN 392
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 337  LVTLPPPASLKLTALMTPTATVCLMSRTQNDRGVGIPGRTLH 212
            L+   PP S ++T   T T ++ +  R        I G T+H
Sbjct: 1361 LIVHAPPHSPQITLTATTTNSLTMKVRPHPTDNAPIHGYTIH 1402


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
 Frame = -3

Query: 352 AFSAALVTL----PPPASLKLTALMTPTATVCLMSRTQNDRGVGIPGRTLHIEAWKVPS* 185
           A SAA V      P P    L+       T C M R  N  G    G TL +E   + S 
Sbjct: 688 ALSAATVRFIEAEPQPIGKALSKCHNRNVTTCNMFRKTNLSGDSSSGTTLLLELDDIASM 747

Query: 184 QWLH 173
           + L+
Sbjct: 748 EILY 751


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 45 RLHTSIGLPHCPHC 86
          RLHT     HC HC
Sbjct: 30 RLHTGEKPYHCSHC 43


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -3

Query: 322  PPASLKLTALMTPTATVCLMSRTQNDRGVGIPGRTLH 212
            PP++  L    + ++++ L  ++ ++ G  + G TLH
Sbjct: 1404 PPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLH 1440


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -3

Query: 322  PPASLKLTALMTPTATVCLMSRTQNDRGVGIPGRTLH 212
            PP++  L    + ++++ L  ++ ++ G  + G TLH
Sbjct: 1400 PPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLH 1436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,379
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)