Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00043
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 132 2e-31
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 132 2e-31
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 132 2e-31
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 132 2e-31
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 114 5e-26
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 56 3e-08
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 41 8e-04
At4g27900.2 68417.m04005 expressed protein 32 0.47
At4g27900.1 68417.m04004 expressed protein 32 0.47
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 29 2.5
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.8
At5g42860.1 68418.m05224 expressed protein 25 6.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 132 bits (319), Expect = 2e-31
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V + P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFA 413
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAVN 305
F VRDMRQTVAVGVIK+V+
Sbjct: 412 FAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 132 bits (319), Expect = 2e-31
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V + P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFA 413
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAVN 305
F VRDMRQTVAVGVIK+V+
Sbjct: 412 FAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 132 bits (319), Expect = 2e-31
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V + P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFA 413
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAVN 305
F VRDMRQTVAVGVIK+V+
Sbjct: 412 FAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 132 bits (319), Expect = 2e-31
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 1 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 180
T+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAG 388
Query: 181 IVNLVPSKPLCVESFQEFPPLGRFA 255
+V + P+KP+ VE+F E+PPLGRFA
Sbjct: 389 MVKMTPTKPMVVETFSEYPPLGRFA 413
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAVN 305
F VRDMRQTVAVGVIK+V+
Sbjct: 412 FAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 114 bits (275), Expect = 5e-26
Identities = 48/79 (60%), Positives = 62/79 (78%)
Frame = +1
Query: 19 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 198
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 199 SKPLCVESFQEFPPLGRFA 255
+KP+ VE++ +PPLGRFA
Sbjct: 61 TKPMVVEAYSAYPPLGRFA 79
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 249 FCVRDMRQTVAVGVIKAV 302
F +RDMRQTV VGVIK+V
Sbjct: 78 FAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/88 (29%), Positives = 44/88 (50%)
Frame = +1
Query: 7 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIV 186
Q++ L + GY +L H C+ E+K ++D +T K + +K+G A +
Sbjct: 427 QILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVC 486
Query: 187 NLVPSKPLCVESFQEFPPLGRFASVT*G 270
+ + +C+E F +FP LGRF T G
Sbjct: 487 RIQVTNSICIEKFSDFPQLGRFTLRTEG 514
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +1
Query: 10 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVN 189
V+VL I G H A A ++ +D +TG+ T+ +P+ + + +A++
Sbjct: 566 VLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLE 625
Query: 190 LVPSKPLCVESFQEFPPLGR 249
+ P+CVE+F E LGR
Sbjct: 626 VSLQNPVCVETFSESRALGR 645
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 151 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 243
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 151 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 243
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 457 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 281
+C L + + +K R C+ A N + F+ F A L+TLPPP+ P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511
Query: 280 ATVCLMSRTQND 245
A +M+ Q +
Sbjct: 512 APGAMMTTDQGN 523
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 91 KFAEIKEKVDRRTGKSTEVNPKSI 162
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 25.0 bits (52), Expect(2) = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 344 RKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 460
R H G++ A T FH+T +L SP G +++S
Sbjct: 33 RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66
Score = 21.4 bits (43), Expect(2) = 6.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 200 PSLYV*SPSRNSH 238
P+ +V SPSR+SH
Sbjct: 24 PAYFVQSPSRDSH 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,384
Number of Sequences: 28952
Number of extensions: 285966
Number of successful extensions: 735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -