Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00042
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    28   1.3  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    28   1.7  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    26   6.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.9  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.9  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 269 YSKTILWRYAYSCCCFRKVTQ 331
           YS+++LW YAY+C  F   T+
Sbjct: 379 YSQSVLWPYAYTCDLFPPDTE 399


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 142 HGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIFN 255
           +G  +++   G +FAE+    P+ S K +L +  KIFN
Sbjct: 251 YGKEIDMWSIGCIFAEMITRTPLFSGKSELDQLYKIFN 288


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 37  LDKSRELEIGIHWKDWRGLCAIKFLRLEEFIDDIR 141
           +DK+RE     HWK W G+    +++ +  ++ +R
Sbjct: 54  IDKARE-NFEAHWKSWIGIEDFSYMK-QHLVNSVR 86


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -1

Query: 758 YLLLQQSGLITWVFKHQLGRGRWRILNQR-SITWMEFVVPLK--HNGL 624
           Y++   +G +  V+   LG+ +W ++ +R  I   +F+  L   H GL
Sbjct: 268 YIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 31  IKLDKSRELEIGIHWKDWRGLCAIKFLRLEEFIDDIRHG-MALELEPQGLLFAEIKFLNP 207
           IK+   R   IG+     R L     LRL +   D +H  +ALE  P G LF  I+   P
Sbjct: 40  IKIIPIRYASIGMEILMMRLLRHPNILRLYDVWTDHQHMYLALEYVPDGELFHYIRKHGP 99

Query: 208 IISRK 222
           +  R+
Sbjct: 100 LSERE 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,283
Number of Sequences: 5004
Number of extensions: 69530
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)