Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00042
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614... 32 0.57
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248... 30 1.7
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 29 5.3
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 29 5.3
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 28 7.0
11_01_0067 + 539152-540063 28 9.3
03_06_0013 - 31007580-31007657,31007795-31007876,31007963-310080... 28 9.3
03_05_0608 - 26086437-26086892,26091253-26091921 28 9.3
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 28 9.3
01_01_0285 - 2360799-2362631 28 9.3
>10_02_0169 -
6142199-6142581,6143015-6143095,6143313-6143691,
6144019-6144372
Length = 398
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 258 QGKNIPRPSYGDMHIPAVVLGRLLKRSSPSIQNIQ 362
QG N PRP Y +PA GR+ +S PS++N++
Sbjct: 233 QGWNQPRPYY--QGVPAAESGRIPGQSEPSVENVK 265
>04_03_0532 -
16824394-16824447,16824545-16824665,16824748-16824875,
16825457-16825603,16825682-16825807,16825895-16826160,
16826259-16826453,16826577-16826657,16826756-16826830,
16827270-16827530,16827633-16827719,16827844-16828060
Length = 585
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 472 GLTPAIPPSVTLGFSISLLSNVADSKLC 389
G PAIPP+ TL F + LLS + +C
Sbjct: 135 GSPPAIPPNATLRFDVELLSWASVKDIC 162
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 572 MEKELQEAFAFLEDSYTRDHYVSKEP 649
+E + E L+D Y RDHYV K+P
Sbjct: 459 VEYYVSEEETTLKDKYPRDHYVFKDP 484
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 240 EKNFQQQGKNIPRPSYGD-MHIPAVVLGRLLKRSSPSIQNIQNA--HITTSQQHSFES 404
E +FQ+ + P D + + + ++ RSSPSI IQ++ HITTS ES
Sbjct: 155 EISFQEFKNKLLEPGLVDHIVVSNKSIAKVYVRSSPSIDRIQDSDIHITTSHLPGIES 212
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 663 CDTPLVEYPPSPSPKLVLEYPSNETRLLK 749
CD L +PP+P P LV Y + LL+
Sbjct: 185 CDESLALFPPTPPPVLVENYHEGFSSLLR 213
>11_01_0067 + 539152-540063
Length = 303
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 615 LTPETIMFQRNHKLHPCDTPLVEYPPSPSPKLVLE 719
L T+ + LHPC PL+ YPP S VLE
Sbjct: 259 LVAATLSSPPSTTLHPC--PLLSYPPKTSAIRVLE 291
>03_06_0013 -
31007580-31007657,31007795-31007876,31007963-31008065,
31008156-31008315,31009016-31009207,31009880-31010194
Length = 309
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 676 KGVSHGWSLWFL*NIMVSGVRIF*KCEGFLELLFHSECRD 557
+G W LWFL ++++GV G + ++HS RD
Sbjct: 186 QGTGGKWGLWFLHKLVLTGV------YGLIVFMYHSRWRD 219
>03_05_0608 - 26086437-26086892,26091253-26091921
Length = 374
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 309 QQEYAYRHKMVLEYFFLVVENFSLALKFRFTRYNR 205
Q EY R + VL +FF F +AL TR R
Sbjct: 273 QAEYGRRMRSVLVFFFSTTTPFGIALGLALTRVYR 307
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 118 EEFIDDIRHGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIF 252
E + R+G A+++ G +FAE+ PI++ K + ++ KIF
Sbjct: 222 ELLLGSTRYGPAVDMWSVGCIFAELLNGKPILTGKNEPEQLSKIF 266
>01_01_0285 - 2360799-2362631
Length = 610
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = -2
Query: 730 LLGYSSTSLGEGDGGYSTKGVSHGWSLWFL*NIMVSGVRIF*KCEGFLELLFHSECRDIR 551
LL Y G GDGG ++ + HG++L L +V IF + F +F S+ +
Sbjct: 161 LLRYRPLRPGPGDGGDASNIIIHGFNLDLLVTRLVIVWYIFLESYQFFTFIF-SDWHKV- 218
Query: 550 RRLKRQSRFWGWH 512
+ + R R WH
Sbjct: 219 KMMCRYVRNESWH 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,302,376
Number of Sequences: 37544
Number of extensions: 425366
Number of successful extensions: 1314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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