Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00042
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)                     93   2e-19
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.3  
SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)           29   4.1  
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   4.1  
SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)                 29   5.4  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      29   5.4  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)                     28   9.5  

>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
          Length = 686

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 38/62 (61%), Positives = 50/62 (80%)
 Frame = +1

Query: 7   QAWDQRFTIKLDKSRELEIGIHWKDWRGLCAIKFLRLEEFIDDIRHGMALELEPQGLLFA 186
           Q W Q+FTI+LDKSRELE+G++W+D R LC + F RLEEF+D+  H + + LEPQGLLFA
Sbjct: 370 QCWQQQFTIELDKSRELEVGVYWRDHRSLCGVAFFRLEEFLDNQEHKIKVPLEPQGLLFA 429

Query: 187 EI 192
           E+
Sbjct: 430 EL 431


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 296  AYSCCCFRKVTQEIFSIHSKYSKCSYNYITTTQFRICH 409
            A+  C   KVT   FS   K++K ++NY+ +    +CH
Sbjct: 948  AFHLCTKCKVTFSHFSELLKHTKSAHNYLPSDNCEVCH 985


>SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)
          Length = 514

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 172 GLLFAEIKFLNPIISRKPKLQRQRKIFNNK 261
           G LFA I F+  +  R+PKL+ QR  FN+K
Sbjct: 422 GFLFA-IGFIWEMFCRRPKLRNQRMQFNSK 450


>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1027

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 288  GDMHIPAVVLGRLLKRSSPSIQNIQNAHITT 380
            GD+ +   +LGRL+  S+ S+ N+ N  +TT
Sbjct: 960  GDIKMSIDILGRLVSASNTSLINVTNEELTT 990


>SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 291 RHKMVLEYFFLVVENFSLALKFR 223
           + K +L++F LV + FSL L+FR
Sbjct: 43  KRKQLLDFFALVFDQFSLVLRFR 65


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 267  NIPRPSYGDMHIPAVVLGRLLKRSSPSIQNIQNAHITTSQQHSFESATFDNREIENP 437
            N+ + +  D+ +PAV L     +S  S+QN+     + S +HS  + T +  + E+P
Sbjct: 1398 NLKQQTKNDVDLPAVPL----VKSGSSLQNLHLGEESRSPEHSSNADTHNELDAESP 1450


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 372 ITTSQQHSFESATFDNREIENPNVTLGGMAGVRPLGLPSTPTPQLPQ 512
           I TSQ          +  I N    + G A   P  LPS P P++ Q
Sbjct: 105 IATSQDTPISDTCSTDLNITNALAAITGQASHEPTLLPSAPAPEVQQ 151


>SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)
          Length = 474

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 351 QNIQNAHITTSQQHSFESATFDNREIENPNVTLGGM 458
           +N+ N  +  +Q H  + AT   R+ E  N+T  G+
Sbjct: 99  RNVTNTRLRNTQHHEHKHATSRTRDSETRNITNTGL 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,312,558
Number of Sequences: 59808
Number of extensions: 497669
Number of successful extensions: 1258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)