Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00042
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    89   3e-18
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    89   3e-18
U23177-1|AAA64332.1|  431|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 37/85 (43%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
 Frame = +1

Query: 13  WDQRFTIKLDKSRELEIGIHWKDWRGLCAIKFLRLEEFID-DIRHGMALELEPQGLLFAE 189
           WDQ+F + LD+SREL+I + + D R +C    ++L   I+   + G+ + +EPQG +F +
Sbjct: 436 WDQKFDVDLDRSRELQIELFYHDDRSMCGFAAVKLSNLIETSSKVGIIVPVEPQGNIFVQ 495

Query: 190 IKFLNPIISRKPKLQRQRKIFNNKE 264
            K++NP++SRKPKL+RQR++F  KE
Sbjct: 496 FKYMNPVVSRKPKLERQRRLFRVKE 520


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 37/85 (43%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
 Frame = +1

Query: 13  WDQRFTIKLDKSRELEIGIHWKDWRGLCAIKFLRLEEFID-DIRHGMALELEPQGLLFAE 189
           WDQ+F + LD+SREL+I + + D R +C    ++L   I+   + G+ + +EPQG +F +
Sbjct: 436 WDQKFDVDLDRSRELQIELFYHDDRSMCGFAAVKLSNLIETSSKVGIIVPVEPQGNIFVQ 495

Query: 190 IKFLNPIISRKPKLQRQRKIFNNKE 264
            K++NP++SRKPKL+RQR++F  KE
Sbjct: 496 FKYMNPVVSRKPKLERQRRLFRVKE 520


>U23177-1|AAA64332.1|  431|Caenorhabditis elegans Hypothetical
           protein C56G2.5 protein.
          Length = 431

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
 Frame = +1

Query: 28  TIKLDKSRELEIGIHWKDWRGLCAIKFLRLEEFID--DIRHGMA------LELEPQGLLF 183
           TI+L KSR+L+  I+  D R LCAI  ++LE  +D  D +   A      + L P+G L 
Sbjct: 274 TIQLFKSRQLDFEIYHTDSRSLCAIGSMQLESLLDEHDAKFPFATFAHRVVNLIPEGTLH 333

Query: 184 AEIKFLNPIISRKPKL 231
            +  + +P  S + KL
Sbjct: 334 FQTTYSDPEQSMEKKL 349


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +1

Query: 376 LHHNNTVSNLPRLIIEKLKILMLHLGVWLE*GP*DYLQHQLHNFLSATPKTYFASSTSS* 555
           + H   VS++P   I  L  L++  GVWL            +NF+  TP +Y A S +  
Sbjct: 2   IFHGVRVSHVPAFQISGLSSLIV--GVWL--------YSSKNNFIELTPTSYSALSAAGL 51

Query: 556 CLYT 567
           C++T
Sbjct: 52  CVFT 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,498
Number of Sequences: 27780
Number of extensions: 376625
Number of successful extensions: 1180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)