Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00042
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 306 QEYAYRHKMVLEYFFL 259
           +EY Y HK++L  ++L
Sbjct: 257 EEYLYSHKLLLNRYYL 272


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 306 QEYAYRHKMVLEYFFL 259
           +EY Y HK++L  ++L
Sbjct: 257 EEYLYSHKLLLNRYYL 272


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 NNTVSNLPRLIIEKLK 432
           NNTV + PR+II  LK
Sbjct: 136 NNTVIHQPRIIIIDLK 151


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 747  STIWSHYLGIQAPAWEREM--EDTQPKEYHMDG 655
            S +W +Y G   PA+ R +   +T   +Y   G
Sbjct: 951  SDVWCYYGGDARPAYRRRLNVNETVCSDYFSQG 983


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,663
Number of Sequences: 438
Number of extensions: 5285
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)