Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00041
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 0.60
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 29 0.79
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 28 1.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.2
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 4.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.6
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 7.4
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 9.7
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 9.7
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 9.7
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 9.7
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 9.7
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.7
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.5 bits (63), Expect = 0.60
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = -3
Query: 755 FM*WMSKMVTMSRCTGSASSHLGSTVSVFVSLSP*SISSGK-YRPGILTKLF-LSFQRFS 582
F WMS VT CTG S ++ I SG+ R +L +LF L+F +
Sbjct: 682 FQFWMSNEVTSVNCTGIVLSFCCDNLA--------KIGSGQSTRVSVLLRLFKLAFMTVN 733
Query: 581 VFSSYSAWNLSKALSRSFIFSTLLRRSLCRSDPTN 477
VF +A L + S+I ST L + +P N
Sbjct: 734 VFPEKNAEVLRPHI--SYIISTSLELTTDAVEPLN 766
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 454 REQILVVPFVGSDRHNDRRSKVEKMKDLDNALDRFQALYEEKTE 585
R IL P SD ND +++ ++K+ ALD+ +E K E
Sbjct: 53 RYPILYTPLSTSDHDNDEENEINELKNAVKALDKRFDNFELKLE 96
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 487 SDRHNDRRSKVEKMKDLDNALDRFQALYEEKTENRWKDRNNFVK 618
+ RH D S+++KM+D LD + E E + +D F++
Sbjct: 287 TQRHTDIESRLQKMQDNAKELDESRRKKIELLEKKERDEEQFLE 330
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -3
Query: 626 PGILTKLFLSFQRFSVFSSYSAWNLSKALSRSFIFSTLLRRSLCRSDPTNGTTSICSLYY 447
PG +++ Q+F++ ++ + S + S S + S+ S S T TTS S
Sbjct: 95 PGRPEQIYAQSQQFNIVEGAASSSSSSSSSSSSLVSSTTSSS---SSATPSTTSSSSSSS 151
Query: 446 VSRSAVCRKSSSERQHQRARARPST 372
S S+ KSSS +R+ T
Sbjct: 152 SSSSSSSSKSSSSSSKSSSRSSSRT 176
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -2
Query: 606 IPVFPTVLSFFFVQRLE----SVQSVIEIFHLLDFTAPIVVPIRPHERNNQYLFSLLCFK 439
I FP L FF + + ++ H + T P + + +E + ++ L+C K
Sbjct: 1528 ITEFPDSLKLFFSDIMGWNFFKSPEIADLNHYIPKTDPRLCDTKTYEESKLIIWKLICQK 1587
Query: 438 ICSL 427
CSL
Sbjct: 1588 ACSL 1591
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 542 LSRSFIFSTLLRRSLCRSDPTNGTTSICSLYYVSRSAVCRKSSSER 405
L +++FS + R P N + I ++S A C K S+ R
Sbjct: 590 LDGTYLFSYIPERLFTEKKPKNASKEIAVTSFLSSHAACSKLSNVR 635
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 741 VKDGDDESLHGLGELTLGVDSECFRLIVTVVYFQREV-SPRNLDKVIPVFPTVLSFFFVQ 565
+ D DE+ H +L + EC ++ ++ F V SP++ K+IP F ++ F +Q
Sbjct: 852 IYDVTDENSHL--KLISSLQDECSDVLYLLMEFLNMVCSPKSYYKLIPSFEQLIQDFHIQ 909
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 108 LNSIDPETGTVARSLELMKEYN 173
+N + E G SL LMKEYN
Sbjct: 1311 INELKAEIGAKTASLNLMKEYN 1332
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 57 KMQ--SIQYLDIVVLDESFLNSIDPETGTVARSLELMKEYNI 176
KMQ S++ L +++L +SF+N +PE ++ L+K+ +
Sbjct: 136 KMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKL 177
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 36 DVDKMSPKMQSIQYLDIVVLDESFLNSIDPE 128
D+DK+S ++S +Y+ V+ D+S L S+ E
Sbjct: 117 DLDKLSDILRSDEYMISVLPDDSVLFSLGDE 147
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 81 DIVVLDESFLNSIDPETGTVARSLELMKEYNIADWGIDPASKLPQDIIDGKSIPKS 248
D VL+E+ N++ P +A +I DW + K ++ SIPK+
Sbjct: 285 DQSVLEETINNTLKPFEEPIAEG-----NADIEDWTFETVKKSDSTVLGNTSIPKN 335
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +1
Query: 682 VDPKCELAEPVQRLIVTIFDIHYMKQTCSNSSWTQRKCLSE 804
++ +C++ + + L+ +FD ++ K+T ++KC E
Sbjct: 47 LEVECKIRDGAETLL-QVFDTNFKKETKERKEMLKKKCTDE 86
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 537 EIFHLLDFTAPIVVPIRPHERNNQYLFSLLC 445
+++HL+D + I + RN+Q LF LC
Sbjct: 130 QVYHLIDNHSCIQTAVSHLLRNHQALFKYLC 160
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 601 RNNFVKIPGRYFPLEIDY 654
RN VK PG+ PL+ID+
Sbjct: 11 RNELVKEPGKVPPLDIDF 28
>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 172 LYSFINSRDLATVPVSGSIEFRKLSSRTTISRYCMDCILGDILSTS-ALVEMT 17
++SF S L + S +I K+ + I +C+ D TS AL EMT
Sbjct: 183 VFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFCLHNAGNDARYTSEALREMT 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,348
Number of Sequences: 5004
Number of extensions: 63958
Number of successful extensions: 219
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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