Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00041
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 50 2e-06
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 39 0.004
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 34 0.16
12_01_0574 - 4697425-4698312 30 2.5
01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314... 30 2.5
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 29 3.3
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 5.8
10_08_0103 + 14818893-14819082,14819878-14819934,14820948-148210... 29 5.8
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 28 7.7
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Frame = +1
Query: 511 SKVEKMKDLDNALDRFQALYEEKTEN---RWKDRNNFVKIPGRYFPLEIDYGDNE-TKTL 678
+K+E+M + +A+ F+ L+ EKT N W+ + NF K PG+++PL+IDYG + K
Sbjct: 526 TKLEEMSKI-HAIQEFRRLFLEKTGNPWEAWEQKTNFQKQPGKFYPLDIDYGVRQGPKRK 584
Query: 679 TVDP-KCELAEPVQRLIVTIFDI 744
+D K L + L+ +F+I
Sbjct: 585 DIDKMKSSLPPQLLELMNMLFNI 607
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 266 SEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILK 445
S+ + +K++ +AV +S L + H+ D K+ Y+ L+++D+ + N
Sbjct: 456 SKGGTMTVKVKGRSAVHESSGLQDTGHILEDG-KSIYNTTLNMSDLTREDNG-------- 506
Query: 446 HNKENRYWLFRSWGRIGT-TIGAVK 517
+ ++FR WGR+G IG K
Sbjct: 507 ----SDCYVFRKWGRVGNEKIGGTK 527
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 750 HEADLLEFELDTEKMPLGKLSK 815
+ A +LEF+++ +MPLGKLSK
Sbjct: 610 YRAAMLEFKINMSEMPLGKLSK 631
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 538 DNALDRFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKT 675
+ A+ F+ + KT N W DR +F +Y LE+DYG+ + +T
Sbjct: 250 EQAIYEFEGKFHGKTNNHWSDRKSFECYARKYTWLEMDYGEADRET 295
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 374 YSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSWGRIG 496
Y ++ +V N FY +Q L+ + + ++ WGR+G
Sbjct: 195 YDATMNQTNVGDNNNKFYIIQALESDAGGSFMVYNRWGRVG 235
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 33.9 bits (74), Expect = 0.16
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 374 YSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSWGRIGT 499
Y ++ +V N FY +Q L+ + + ++ WGR+GT
Sbjct: 157 YDATMNQTNVGGNNNKFYIIQALESDAGGNFMVYSRWGRVGT 198
>12_01_0574 - 4697425-4698312
Length = 295
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -1
Query: 523 SRLYCADRCADPTPRTEQPVSVLFIMFQDLQFVERVLLSDNISEREHDRVRCFVAV 356
+RL DR A P P T + L QDL +VL +ER D RC++AV
Sbjct: 94 ARLASMDRRA-PAPATTAATAGLRGRLQDLTAGVQVLRRQVSAERRGDAARCYLAV 148
>01_06_1462 +
37530509-37530874,37531012-37531099,37531352-37531484,
37531567-37532326
Length = 448
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 338 ECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKHNK 454
+C++ +R K+TY + L L++VV + + L +H K
Sbjct: 131 QCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRK 169
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = -2
Query: 642 QREVSPRNLDKVIPVFPTVLSFFFVQRLESVQSVIEIFHLLDFTAPIVVP 493
+R+ PR L+K IP+ P+V +FF + + ++ E+ ++ + P+V P
Sbjct: 255 KRQFKPRCLEKKIPIDPSVRNFF--RGVAPIEKA-EVKYMYELGKPLVKP 301
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 642 QREVSPRNLDKVIPVFPTVLSFFFVQRL 559
+R+ PR+ +K IP+ P+V +FF V +L
Sbjct: 644 KRQFKPRSPEKKIPIDPSVRNFFRVPQL 671
>10_08_0103 +
14818893-14819082,14819878-14819934,14820948-14821056,
14821137-14821362,14821521-14821637,14821735-14821893
Length = 285
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 490 DRHNDRRSKVEKMKDLDNALDRFQALYEEKTENRWKDRNNFV 615
++H+D ++ VE +K+ A F Y+++ RW RN +V
Sbjct: 122 NKHSDEKTLVEAVKENFFAEHLFSDQYQDRQLFRWHLRNTYV 163
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 332 DEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSW 484
+E+ H+ T R + +LSL ++ Q YKL+I HN + F SW
Sbjct: 1728 EEQAHIQTLRGRIL-ETILSLRFLIFQYGIVYKLKIASHNTSLAVYGF-SW 1776
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,314,938
Number of Sequences: 37544
Number of extensions: 399474
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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