Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00041
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)                    79   6e-15
SB_34589| Best HMM Match : WGR (HMM E-Value=0.37)                      43   3e-04
SB_30375| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           30   2.6  

>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
          Length = 834

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 14/98 (14%)
 Frame = +2

Query: 266 SEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILK 445
           S+   VKL ++ G AVDPASE++++CHV   +    YS  L + D+    NS+YKLQ+LK
Sbjct: 384 SQPKKVKLSVKGGAAVDPASEMEDDCHVLEVK-GVVYSATLGMVDISRGTNSYYKLQVLK 442

Query: 446 HNKENRY--------------WLFRSWGRIGTTIGAVK 517
            +K +R               +LFRSWGR+GTTIG  K
Sbjct: 443 KDKSSRTGAKNDIVRFTHDRCYLFRSWGRVGTTIGGSK 480



 Score = 33.1 bits (72), Expect = 0.28
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +3

Query: 762 LLEFELDTEKMPLGKLSK 815
           L+EFE+D +KMPLGKL+K
Sbjct: 521 LIEFEIDLKKMPLGKLTK 538


>SB_34589| Best HMM Match : WGR (HMM E-Value=0.37)
          Length = 113

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 532 DLDNALDRFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCEL-AE 708
           +LD A   F+  + +KT+N W+DR +F K+ G+Y  L +DY   E   +    K E  A+
Sbjct: 15  NLDAAKRTFEKKFSDKTKNDWEDRASFTKVQGKYDLLIMDYKAEENDEVDAPVKEEKPAK 74

Query: 709 PVQRL 723
           P  +L
Sbjct: 75  PESKL 79


>SB_30375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
 Frame = +1

Query: 493 RHNDR-RSKVEKMKDLDNALDRFQALYEEKTENRWKDRNNFVKIPGRY---FP-LEIDYG 657
           R  DR + ++    D   A D F+ ++  KT N W ++ +FVK P +Y    P     + 
Sbjct: 129 RIGDRGQHQLTPFSDAKAATDEFKKIFRSKTGNLWDEKGSFVKHPKKYSLVLPERNPQFH 188

Query: 658 DNETK------TLTVDPKCELAEPVQRLIVTIFDIHYMKQTCSNSS 777
             + K       L   P  +L +P+Q L+  I D  +++++ S+ S
Sbjct: 189 HRKPKDILKPFDLEACPPSKLPKPLQTLMKAITDQEWLRKSVSHHS 234



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 416 NSFYKLQILKHNKENRYWLFRSWGRIG 496
           N+FYK+Q++    +N + L   WGRIG
Sbjct: 105 NNFYKMQVIFEKGKNLWVLLTRWGRIG 131


>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = +1

Query: 526 MKDLDNALDRFQALYEEKTENRWKDRNNFVKI 621
           +KD+D  LD+F +L++ +  + W++++N+V I
Sbjct: 318 IKDIDKLLDKFMSLHKPEDISAWEEKHNYVWI 349


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 553 RFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCELAEPVQRLIVT 732
           + Q L EE +    K   +F+K PG+  P  +D   N+T ++ V    E    +  L+ T
Sbjct: 345 QLQHLKEENSPQMRKPTTHFLK-PGKLIPAGLDSTPNKTNSVAVCWSKETQLSIYSLVKT 403

Query: 733 IFDIHY 750
             DI +
Sbjct: 404 AKDIEH 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,774,780
Number of Sequences: 59808
Number of extensions: 467399
Number of successful extensions: 1376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)