Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00041
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 63 2e-10
At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+) A... 43 2e-04
At3g05650.1 68416.m00629 disease resistance family protein conta... 33 0.30
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s... 31 0.91
At3g21140.1 68416.m02671 expressed protein 31 1.2
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 31 1.2
At5g61560.1 68418.m07725 protein kinase family protein contains ... 29 2.8
At3g47040.1 68416.m05108 glycosyl hydrolase family 3 protein bet... 29 2.8
At5g23650.1 68418.m02773 myb family transcription factor contain... 29 3.7
At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr... 29 3.7
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s... 29 4.9
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr... 29 4.9
At5g18410.2 68418.m02167 expressed protein similar to p53 induci... 28 6.4
At5g18410.1 68418.m02166 expressed protein similar to p53 induci... 28 6.4
At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein bet... 28 8.5
At3g10800.1 68416.m01300 bZIP transcription factor family protei... 28 8.5
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/77 (37%), Positives = 49/77 (63%)
Frame = +2
Query: 266 SEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILK 445
+ +S V +K++ +AV AS L E CH+ D + Y+ LS++D+ NS+Y LQI++
Sbjct: 487 TSESLVTVKVKGRSAVHEASGLQEHCHILEDG-NSIYNTTLSMSDLSTGINSYYILQIIQ 545
Query: 446 HNKENRYWLFRSWGRIG 496
+K + ++FR WGR+G
Sbjct: 546 EDKGSDCYVFRKWGRVG 562
Score = 52.8 bits (121), Expect = 3e-07
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Frame = +1
Query: 511 SKVEKMKDLDNALDRFQALYEEKTENRWKD---RNNFVKIPGRYFPLEIDYGDNE--TKT 675
+KVE+M D A+ F+ L+ EKT N W+ + NF K PG++ PL+IDYG N+ K
Sbjct: 569 NKVEEMSKSD-AVHEFKRLFLEKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNKQVAKK 627
Query: 676 LTVDPKCELAEPVQRLIVTIFDI 744
LA + L+ +FD+
Sbjct: 628 EPFQTSSNLAPSLIELMKMLFDV 650
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 750 HEADLLEFELDTEKMPLGKLSK 815
+ + ++EFE++ +MPLGKLSK
Sbjct: 653 YRSAMMEFEINMSEMPLGKLSK 674
>At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+)
ADP-ribosyltransferase / poly[ADP-ribose] synthetase
(APP) identical to SP|Q11207 Poly [ADP-ribose]
polymerase (EC 2.4.2.30) (PARP) (ADPRT) (NAD(+) ADP-
ribosyltransferase) (Poly[ADP-ribose] synthetase)
{Arabidopsis thaliana}
Length = 637
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 538 DNALDRFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNE 666
D A++ F + +KT+N W DR F+ P Y LE+DYG E
Sbjct: 224 DRAIEIFTNKFNDKTKNYWSDRKEFIPHPKSYTWLEMDYGKEE 266
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 326 ELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSWGRIG 496
E+ + HV R Y +L+ +V N F+ LQ+L+ + + Y ++ WGR+G
Sbjct: 154 EIKSQYHVL-QRGDDVYDAILNQTNVRDNNNKFFVLQVLESDSKKTYMVYTRWGRVG 209
>At3g05650.1 68416.m00629 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-4A protein
[Lycopersicon esculentum] gi|3097197|emb|CAA73187
Length = 868
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -1
Query: 217 SWGSLEAGSIPQSAILYSFINSRDLATVPVSGSIEFRKLSSRTTIS 80
+WG+ G++P S + + S +L ++G++EF +SS +T++
Sbjct: 245 AWGNAFTGTLPSSLFTIASLTSINLRNNQLNGTLEFGNISSPSTLT 290
>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 552
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +1
Query: 541 NALDRFQALYEEKTEN--RWKDRNNFVKIPGRYFPLEID----YGDNETKTLTVDPKCEL 702
N + + ++E K E RW+ +++ +P+ + Y + E L++ C L
Sbjct: 88 NLVVLYVKVFERKPEKVYRWEAMQEDIELGHETYPMVLVQIPMYNEKEVLQLSIGAACRL 147
Query: 703 AEPVQRLIVTIFD 741
P+ RLIV + D
Sbjct: 148 IWPLDRLIVQVLD 160
>At3g21140.1 68416.m02671 expressed protein
Length = 387
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 553 RFQALYEEKTENRWKDRNNFVKIPGRYFPLEID-YGDN---ETKTLTVDPKCELAEP 711
R QAL +T + +D N F PG F L + G N ET +D + LA P
Sbjct: 56 RIQALLRNETPSEGEDNNGFGFFPGDIFSLSQEKLGSNSNGETSHSVIDVEASLAHP 112
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 667 SHCHR--SLFPAGSIAPES*QSYSCLSNGSQFFLR-TALGICPKRYRDLSSSRLYCADRC 497
+ CH S P ++ SY+C + F++ +C K YRD S+ + C D C
Sbjct: 248 TRCHSCDSTVPGNGLSVRWFLSYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDIC 307
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 539 SRSFIFSTLLRRSLCRSDPTNGTTSICSLYYVSRSAV--CRKSSSERQHQRARARPSTLF 366
S S IFS L+RS S + T CS++ +S+ + RKS + + A R + F
Sbjct: 120 SSSIIFSWKLKRSNLSSRIADATPRFCSVHVISKGKLLNVRKSDMDTETSIADDRSESRF 179
Query: 365 CS 360
S
Sbjct: 180 SS 181
>At3g47040.1 68416.m05108 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 636
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 584 SVFSSYSAWNLSKALSRSFIFSTLLRRSL 498
+V +SYS+WN SK S F+ + LL++ L
Sbjct: 278 TVMASYSSWNGSKLHSDYFLLTELLKQKL 306
>At5g23650.1 68418.m02773 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 337
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 529 KDLDNALDRFQALYEEKTENRWK 597
KD D A ++ A+Y +KTE RWK
Sbjct: 15 KDDDIAFEKALAIYNDKTEIRWK 37
>At1g53440.1 68414.m06057 leucine-rich repeat family protein / protein
kinase family protein contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 1035
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 18 VISTKADVDKMSPKMQSIQYLD-IVVLDE--SFLNSIDPETGTVARSLELMKEYNIADWG 188
++S K++ + PK + I LD VL E S L +DP+ GT E M+ NIA
Sbjct: 862 IVSGKSNTN-YRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLC 920
Query: 189 IDPASKL 209
+P+ L
Sbjct: 921 TNPSPTL 927
>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 504
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1
Query: 589 RWKDRNNFVKIPGRYFPLEID----YGDNETKTLTVDPKCELAEPVQRLIVTIFD 741
+W+ +++ + FP+ + Y + E L++ C L P+ RLIV + D
Sbjct: 58 KWEAMQEDLELGNQNFPMVLVQIPMYNEREVFKLSIGAACRLIWPLDRLIVQVLD 112
>At1g53430.1 68414.m06056 leucine-rich repeat family protein / protein
kinase family protein contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 1030
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 18 VISTKADVDKMSPKMQSIQYLD-IVVLDE--SFLNSIDPETGTVARSLELMKEYNIADWG 188
++S K++ + PK + + LD VL E S L +DP+ GT E M+ NIA
Sbjct: 856 IVSGKSNTN-YRPKEEFVYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLC 914
Query: 189 IDPASKL 209
+P+ L
Sbjct: 915 TNPSPTL 921
>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1017
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 608 LFLSFQRFSVFSSYSAWNLSKALSRSFIFS 519
+F+S S+F+ Y +W+ S+ L SF+F+
Sbjct: 698 IFVSRLSESIFTYYKSWSASELLDPSFLFA 727
>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1234
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 608 LFLSFQRFSVFSSYSAWNLSKALSRSFIFS 519
+F+S S+F+ Y +W+ S+ L SF+F+
Sbjct: 698 IFVSRLSESIFTYYKSWSASELLDPSFLFA 727
>At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 612
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 584 SVFSSYSAWNLSKALSRSFIFSTLLRRSL 498
+V +SYS+WN K S F+ + +L++ L
Sbjct: 253 TVMASYSSWNGDKLHSHYFLLTEILKQKL 281
>At3g10800.1 68416.m01300 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; contains similarity to TGACG-sequence specific
DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana
tabacum]
Length = 675
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 666 LIVTVVYFQREVSPRNLDKVIPVFPTVLS-FFFVQRLESVQSV 541
++V+V+ REV D+V+P P LS F V L+SV+ V
Sbjct: 617 MVVSVLLDPREVVDSETDRVVPPNPKSLSRIFVVVLLDSVKYV 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,590
Number of Sequences: 28952
Number of extensions: 330525
Number of successful extensions: 1113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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