Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00040
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    26   6.3  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   6.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   6.3  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.4  

>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 561 TMSWSIREPRTQTPNRGLCYDCDPRTTRVGG 653
           T   ++ E RT+    G+ Y CDPR     G
Sbjct: 38  TQDPALNEVRTEKLKNGVTYVCDPRPGHFSG 68


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 214 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 116
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 590 SRFSNTPRHRPSFPITPASSSTSRIA 513
           +R ++TP +  S P  P+SSST  I+
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSIS 132


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 575 TPRHRPSFPITPASSSTSR 519
           TPRH+P F ++ A SS ++
Sbjct: 618 TPRHKPKFDLSKALSSVAK 636


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 487 YSPARHNPVVGPSRRRHQQDL 425
           Y  A HNP V    RRH ++L
Sbjct: 87  YKAAMHNPKVSQKGRRHAKEL 107


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 635 NYPSGRIQDSWDVRGN 682
           NY S R++D WD++ N
Sbjct: 354 NYESSRVEDFWDIQLN 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,636
Number of Sequences: 5004
Number of extensions: 54223
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)