Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00040
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1033 - 8080179-8080685                                           45   7e-05
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617...    40   0.002
02_05_0651 + 30644241-30644615,30644751-30644858                       40   0.003
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580...    33   0.18 
06_01_0197 - 1525945-1526622                                           28   6.6  

>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +1

Query: 514 AMREVLEEAGVIGKLGRCLG--VFENREHKHRTE--VYVMTVTQELPEWEDSRLMGRKRQ 681
           A RE LEEAGV+G++G  LG   + +R +    E  V+ + VT EL  W +  +  R+R 
Sbjct: 75  ARREALEEAGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRWPE--MAARRRS 132

Query: 682 WFSIDDAL 705
           W S   A+
Sbjct: 133 WVSPQQAM 140


>07_01_0793 -
           6169661-6169936,6170942-6171025,6171473-6171590,
           6172917-6172987
          Length = 182

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
 Frame = +1

Query: 514 AMREVLEEAGVIGKLGRCLGVFENREHKH----------RTEVYVMTVTQELPEWEDSRL 663
           A RE +EEAGV G L + LG ++ +   H          R  V+ + V +EL  W +   
Sbjct: 76  AAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFALRVKEELASWPEQST 135

Query: 664 MGRKRQWFSIDDAL 705
             RKR W ++ +A+
Sbjct: 136 --RKRTWLTLSEAV 147


>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +1

Query: 514 AMREVLEEAGVIGKLGRCLGVFENREHKHRTE----VYVMTVTQELPEWEDSRLMGRKRQ 681
           A RE LEEAGV G     LG +  +  ++ T     ++ + VT EL +W +  +  RKR 
Sbjct: 67  ARREALEEAGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPE--MSSRKRT 124

Query: 682 WFSIDDAL 705
           W ++  A+
Sbjct: 125 WATVQQAM 132


>02_04_0020 -
           18956282-18956461,18956591-18956740,18957934-18958017,
           18958283-18958403,18958525-18958604
          Length = 204

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
 Frame = +1

Query: 514 AMREVLEEAGVIGKLGRC-LG--VFENREHKHRTE--------VYVMTVTQELPEWEDSR 660
           A RE +EEAGV G + R  LG  VF+++  ++ +         ++ M VT+EL  W +  
Sbjct: 80  ASREAMEEAGVKGIVNRTTLGHWVFKSKSSQNSSSPRGACKGYIFAMEVTEELESWPEQA 139

Query: 661 LMGRKRQWFSIDDA 702
             GR+  W S  +A
Sbjct: 140 THGRR--WVSPGEA 151


>06_01_0197 - 1525945-1526622
          Length = 225

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 534 GSRSDRETRTMSWSIREPRTQTPNRGLCY 620
           G R  R  R +S+S+R PRT  P RG+ +
Sbjct: 136 GLRPPRALRRLSYSLRCPRTGGPARGVVH 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,475,249
Number of Sequences: 37544
Number of extensions: 360143
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)