Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00040
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   59   3e-09
SB_48035| Best HMM Match : rve (HMM E-Value=0.00061)                   30   1.7  
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.9  
SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)                       29   5.1  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    29   5.1  
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +2

Query: 329 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWI 469
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWV 129


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +2

Query: 329 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWI 469
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWV 94



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
 Frame = +1

Query: 511 TAMREVLEEA-----GVIGKLGRCLG------VFENREHKHRTEVYVMTVTQELPEWEDS 657
           TA+REV EE       ++    RCL        ++N   K  T V+V+TVT+EL  W+++
Sbjct: 109 TAIREVQEEVRKRKRSLLLLASRCLDNAAVSLPYDNSRSK--TWVFVLTVTEELEVWDEA 166

Query: 658 R 660
           R
Sbjct: 167 R 167


>SB_48035| Best HMM Match : rve (HMM E-Value=0.00061)
          Length = 206

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 718 RRAEPGHHQWRT 683
           RRAEPGHH WR+
Sbjct: 165 RRAEPGHHSWRS 176


>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 505  FFTAMREVLEEAGVIGKLGRCLGVFENREHKH 600
            F TA+RE+ EE GVIG+  R +   ENR   H
Sbjct: 1194 FRTALRELAEEGGVIGRAERYM---ENRHILH 1222


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
 Frame = -3

Query: 352  RIRLLLYHFCLQTRKHERNERSQN*Y--RH*LKRKL*NEQNFLMINK---RH--IRCILC 194
            RIRL   H   + R H+R+E S+N    RH + RK   +++  + N+   RH   R  L 
Sbjct: 842  RIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHKALCNRLCDRHEVSRKRLR 901

Query: 193  RTYPFSTIKLHNVHKKS 143
              +  S I+LH+ H+ S
Sbjct: 902  DRHKASRIRLHDRHEAS 918


>SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)
          Length = 603

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 495 KRSLLHCDAGGT*GSRSDRETRTMSWSIREPRTQTPNRGLCY 620
           K+ L+ C AG + G    R  + + W I +PR +T +   CY
Sbjct: 25  KQHLIKCIAGISAGILK-RRRKKIDWQITDPRWRTKSASKCY 65


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = +3

Query: 357 GYMTTRVLGDGRHVFACVQMPKQRS--CW*RLRDGPTTGLCRAGE*SRKR-----SLLHC 515
           G MTT   G   H++A V++ ++     W  + D   +GLC+  E +R +     +L HC
Sbjct: 734 GAMTTTKYGPKYHIYAVVRLTEKAMTVVWDEVFDCDKSGLCKPEEKNRFQMYLLDALPHC 793

Query: 516 DAGG 527
            + G
Sbjct: 794 GSSG 797


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 411 ERTQIHAARRLKPSSSYILIELGFSFTIFVCKHVNTNETNDHKINTDIN 265
           +RT     R ++ +   +++  GF   +  CK  N +E N+ K N   N
Sbjct: 53  DRTSTEPERSVRNALKAMILVYGFLQVLSHCKKQNASENNESKTNKSTN 101


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 516 DAGGT*GSRSDRETRTMSWSIREPRTQTPNRGLCY 620
           D  G+ G+   R+ +   W I +PR +T +   CY
Sbjct: 40  DGFGSNGTLKRRQKKNNDWQITDPRWRTKSANKCY 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,725,625
Number of Sequences: 59808
Number of extensions: 428135
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)