Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00040
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    58   8e-09
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 25/60 (41%), Positives = 43/60 (71%)
 Frame = +1

Query: 514 AMREVLEEAGVIGKLGRCLGVFENREHKHRTEVYVMTVTQELPEWEDSRLMGRKRQWFSI 693
           A RE++EEAGV   + + +G+F++   KHRT+V++M V++EL  WE++   GR+R W ++
Sbjct: 70  AHRELMEEAGVRATILKKIGMFQDDVRKHRTQVFLMEVSEELQTWEENE-YGRQRIWMNV 128



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 KMVKEKPNSIRIYDDEGFRRRAACICVR-SDAETEVLLVTSSRRPDNWI 469
           K  + + N +R+ D +GFR RAA +C++ +  ET VLLV+  +    W+
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWV 54


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 181 FSTIKLHNVHKKS--NYNNNKTTIRAMF*L*LAFDRIFQA-HVE 59
           ++T KL N+HKKS  N+NN+K  +  +      FD +F   HV+
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSKKCLTLL----TRFDDLFSIDHVD 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,216
Number of Sequences: 27780
Number of extensions: 317504
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)