Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00040
(729 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 27 0.14
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 27 0.14
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.97
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.97
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.9
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 3.9
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 3.9
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 3.9
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 3.9
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 3.9
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 3.9
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 23 3.9
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 3.9
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 3.9
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 9.0
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 27.5 bits (58), Expect = 0.14
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -3
Query: 313 RKHERNERSQN*YRH*LKRKL*NEQNFLMINKRHIRCILCRTYPFSTIKLHNVHKKSNYN 134
+K +NER YR K + + + I L Y +S +N + +NYN
Sbjct: 47 QKSYKNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN 106
Query: 133 NN 128
NN
Sbjct: 107 NN 108
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 27.5 bits (58), Expect = 0.14
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -3
Query: 313 RKHERNERSQN*YRH*LKRKL*NEQNFLMINKRHIRCILCRTYPFSTIKLHNVHKKSNYN 134
+K +NER YR K + + + I L Y +S +N + +NYN
Sbjct: 47 QKSYKNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN 106
Query: 133 NN 128
NN
Sbjct: 107 NN 108
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.97
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 392 ACICVRSDAETEVLLVTSSRRPDNW 466
+CICVR AE +L S++ ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.97
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 392 ACICVRSDAETEVLLVTSSRRPDNW 466
+CICVR AE +L S++ ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.0 bits (47), Expect = 2.9
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -3
Query: 313 RKHERNERSQN*YRH*LKRKL*NEQNFLMINKRHIRCILCRTYPFSTIKLHNVHKKSNYN 134
R ER QN Y++ + + E++ R R S++ +H +NYN
Sbjct: 271 RYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYN 330
Query: 133 NN 128
NN
Sbjct: 331 NN 332
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 175 TIKLHNVHKKSNYNNN 128
TI +N + +NYNNN
Sbjct: 322 TIHNNNNYNNNNYNNN 337
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 166 LHNVHKKSNYNNN 128
+HN + K NYNNN
Sbjct: 89 IHNNNYKYNYNNN 101
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 166 LHNVHKKSNYNNN 128
+HN + K NYNNN
Sbjct: 89 IHNNNYKYNYNNN 101
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 166 LHNVHKKSNYNNN 128
+HN + K NYNNN
Sbjct: 90 IHNNNYKYNYNNN 102
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 166 LHNVHKKSNYNNN 128
+HN + K NYNNN
Sbjct: 90 IHNNNYKYNYNNN 102
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 166 LHNVHKKSNYNNN 128
+HN + K NYNNN
Sbjct: 90 IHNNNYKYNYNNN 102
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 166 LHNVHKKSNYNNN 128
+HN + K NYNNN
Sbjct: 90 IHNNNYKYNYNNN 102
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 178 STIKLHNVHKKSNYNNN 128
S++ +H +NYNNN
Sbjct: 83 SSLSNKTIHNNNNYNNN 99
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.6 bits (46), Expect = 3.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 178 STIKLHNVHKKSNYNNN 128
S++ +H +NYNNN
Sbjct: 83 SSLSNKTIHNNNNYNNN 99
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.6 bits (46), Expect = 3.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 328 NGKGEA*FDKDI*RRGF*ATGGMYLRAFRCRNRGPAGDVFETAR 459
NG+ EA + K + + LRA+ C G GD+ T +
Sbjct: 46 NGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 166 LHNVHKKSNYNNNK 125
+HN + +NYNN K
Sbjct: 312 IHNNNNYNNYNNKK 325
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,532
Number of Sequences: 438
Number of extensions: 4364
Number of successful extensions: 28
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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