BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00039 (710 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 80 4e-16 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 40 5e-04 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001 SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 35 0.010 SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 35 0.013 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.023 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.070 SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.070 SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.070 SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 31 0.16 SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.38 SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 30 0.38 SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.50 SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.5 SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5 SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.0 SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 2.6 SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 2.6 SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.6 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.5 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 3.5 SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 3.5 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.6 SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 6.1 SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 6.1 SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 6.1 SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 8.1 SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.1 >SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 79.8 bits (188), Expect = 4e-16 Identities = 34/57 (59%), Positives = 43/57 (75%) Frame = +2 Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLS 679 NRVTILC+K+ GHPKGFAYIEF + V A+ ++ S+ RP+KV PKRTN PG+S Sbjct: 82 NRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMS 138 Score = 62.5 bits (145), Expect = 6e-11 Identities = 36/81 (44%), Positives = 46/81 (56%) Frame = +3 Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446 +L +K RV EME EA KL+ MQ ++D + T L +K D +SVYVG Sbjct: 13 ELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVG 60 Query: 447 NVDYGATAEELEQHFHGCGSI 509 NVDY T EEL+ HF CGS+ Sbjct: 61 NVDYSVTPEELQSHFASCGSV 81 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 39.5 bits (88), Expect = 5e-04 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = +2 Query: 530 NKYDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRPIKVMPKR 658 +K +PKGFAYI+F D D+V+ + +D F+GR + V+P + Sbjct: 357 DKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 37.9 bits (84), Expect = 0.001 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = +2 Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667 I+ +K G KG AY+EF +DSVQ A+A+ G P+ V K Sbjct: 271 IVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEK 319 >SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 35.1 bits (77), Expect = 0.010 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +2 Query: 551 KGFAYIEFGDKDSVQTAMAMDE-SLFRGRPIKVMPKRTNKP 670 KGFAYI+F D V A+ ++E + GR +++M ++ KP Sbjct: 311 KGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKSTKP 351 Score = 29.5 bits (63), Expect = 0.50 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +3 Query: 429 RSVYVGNVDYGATAEELEQHFHGCGSI 509 R V+VGN+ + A E L ++F CGSI Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSI 296 >SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 34.7 bits (76), Expect = 0.013 Identities = 14/57 (24%), Positives = 32/57 (56%) Frame = +2 Query: 518 TILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTN 688 T++ +K G P+GF ++ + ++ +V+ M+ G+P++V + T K L ++ Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEV-KRATPKASLRDSH 332 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 33.9 bits (74), Expect = 0.023 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 408 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQ 521 +++ + +V+VGN+ + AT ++L F GCG I ++ Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIR 396 Score = 32.3 bits (70), Expect = 0.070 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 542 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646 G KGF Y+ F D DS + + M+ GRP ++ Sbjct: 404 GRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRL 438 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 32.3 bits (70), Expect = 0.070 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +2 Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRPPRTM 706 KGFAY++F +D+++ A+ E GR I + ++N ++P T+ Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILI---KSNTDFSGRPSKPANTL 213 Score = 31.5 bits (68), Expect = 0.12 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +3 Query: 366 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509 S P T SI+ + + ++VGN+D+ T +L++HF G I Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 32.3 bits (70), Expect = 0.070 Identities = 12/41 (29%), Positives = 25/41 (60%) Frame = +3 Query: 396 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGL 518 +S+ + E ++ ++YVGN+D + EE+ +HF G + + Sbjct: 6 LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46 >SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Schizosaccharomyces pombe|chr 2|||Manual Length = 388 Score = 32.3 bits (70), Expect = 0.070 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646 +GF Y+EF D++ A+A+ GRP+++ Sbjct: 133 RGFGYVEFETADTLSAALALSGEDLMGRPVRI 164 >SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces pombe|chr 2|||Manual Length = 381 Score = 31.1 bits (67), Expect = 0.16 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +3 Query: 261 APDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV 437 AP + I + ME+ + K+ +TEV ++ S GL LN+ + ADN V Sbjct: 52 APKIIHIASDENWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110 >SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 529 Score = 29.9 bits (64), Expect = 0.38 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +3 Query: 360 MGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQY 524 MG PP SP+ + + I NR+VY+GN+ T EE+ G G + ++Y Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRY 353 Score = 29.9 bits (64), Expect = 0.38 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = +3 Query: 426 NRSVYVGNVDYGATAEELEQHFHGCGSITGLQYY 527 +R++Y+GN D T E L++ F G I + ++ Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFF 446 >SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Schizosaccharomyces pombe|chr 1|||Manual Length = 938 Score = 29.9 bits (64), Expect = 0.38 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +2 Query: 581 KDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRPP 697 ++ ++A+A + SL G P NKP SST++PP Sbjct: 425 ENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPP 463 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 29.5 bits (63), Expect = 0.50 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = +2 Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631 +V ++ N+Y G G+ ++EF +AM+M+ G Sbjct: 121 KVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPG 160 >SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1079 Score = 27.9 bits (59), Expect = 1.5 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +3 Query: 258 EAPDLAAIKARVREMEE-EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRS 434 E P++ + +E E+ E EKL++ Q + K+ S G +S ++ ++ A+N S Sbjct: 171 EIPEVRVKTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDS 230 Query: 435 VYVGNVDYGA 464 G G+ Sbjct: 231 SAKGKQAAGS 240 >SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 233 Score = 27.9 bits (59), Expect = 1.5 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +3 Query: 303 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAEE 476 +E EK + DK S+ +PP T S +K + ++R V +VGN+ ++ E Sbjct: 52 DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107 Query: 477 LEQHFHGCGSITGLQ 521 L+ HF G + ++ Sbjct: 108 LQLHFKRAGQVPSVR 122 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +2 Query: 515 VTILCNKYDGHPKGFAYIEF--GDKDSVQTAMAMDESLFRGRPIKV 646 V I +K G KG+A++EF D + A+ ++++ R I + Sbjct: 121 VRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166 >SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1064 Score = 27.5 bits (58), Expect = 2.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 214 YSLSR*FLPNDCCQSSLKNHHFLPFP 137 Y R ++P D + SL++ HFLPFP Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802 >SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 27.1 bits (57), Expect = 2.6 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +3 Query: 426 NRSVYVGNVDYGATAEELEQHFHGCGSI 509 N++VY+ + T +E+E+ F CG I Sbjct: 109 NKAVYIQGLPLDVTVDEIEEVFKKCGVI 136 >SPBC119.15 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 27.1 bits (57), Expect = 2.6 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 13/84 (15%) Frame = +3 Query: 270 LAAIKARVREMEE----EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEK----IEAD 425 L A+KA+V+E EE E E++K++Q + ++ L +++S +++ +D Sbjct: 253 LEAVKAKVKEYEEEYVPEMERMKEIQRQTKERQKEAQLSKLMKDMHVSKDKEDVGLTVSD 312 Query: 426 NRSVYVGNV-----DYGATAEELE 482 Y G + D G TAE+ E Sbjct: 313 AEDEYNGELVDPDEDDGLTAEDRE 336 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 435 VYVGNVDYGATAEELEQHFHGCGSI 509 VYVGN+ + T E++ F CG I Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 26.6 bits (56), Expect = 3.5 Identities = 10/48 (20%), Positives = 23/48 (47%) Frame = +3 Query: 378 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQ 521 ++ PL + + R +YV N+D+ +++E F G + ++ Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVR 787 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 26.6 bits (56), Expect = 3.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 408 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGL 518 E ++A+ +VY+ N+D T +E F G IT L Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 290 >SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 654 Score = 26.6 bits (56), Expect = 3.5 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +3 Query: 381 TSPLNMSIEEKI-EADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQY 524 + PL +E+ I +R+VY ++ T EELE G I ++Y Sbjct: 483 SGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKY 531 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 26.2 bits (55), Expect = 4.6 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 411 KIEADNRSVY-VGNVDYGATAEELEQHFHGCGSITGLQYYAISMM 542 K+ D+ Y +GN+D A+ L F+ G +TG+ Y +M Sbjct: 578 KLIVDSHVQYRLGNIDAYQLADGLHYIFNHVGQLTGMYRYKYRLM 622 >SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosaccharomyces pombe|chr 2|||Manual Length = 1172 Score = 25.8 bits (54), Expect = 6.1 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +3 Query: 315 EKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 485 EK+K+++ E +QMS+ S L S L ++ E I + S+ + N +L+Q Sbjct: 279 EKIKKIEDERMRQMSVSSDRTLDSQL-QTVNENITRISTSIELKNTALEEEHGDLQQ 334 >SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 242 Score = 25.8 bits (54), Expect = 6.1 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +3 Query: 264 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSP 371 P+LA +AR +E E KLK + T ++ + P Sbjct: 89 PELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKP 124 >SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual Length = 282 Score = 25.8 bits (54), Expect = 6.1 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 512 RVTILCNKYDGHPKGFAYIEFGDKD 586 RV + +K G KGFA++ + D+D Sbjct: 230 RVYLAKDKETGRAKGFAFVSYYDRD 254 >SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 457 Score = 25.4 bits (53), Expect = 8.1 Identities = 8/28 (28%), Positives = 20/28 (71%) Frame = +3 Query: 291 VREMEEEAEKLKQMQTEVDKQMSMGSPP 374 ++++EEE EKL+ ++ +++++S P Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400 >SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 121 Score = 25.4 bits (53), Expect = 8.1 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +2 Query: 542 GHPKGFAYIEFGDKDSVQTAM------AMDESLFRGRPIKVMPKRTNKPGLSSTNR 691 G+ KG+A IE+ + Q A+ +DE L P+R +P +S+ +R Sbjct: 48 GYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLEVDFAFLEPPERAPRPSISTRSR 103 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,755,128 Number of Sequences: 5004 Number of extensions: 54528 Number of successful extensions: 200 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 199 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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