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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00039
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      80   4e-16
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    40   5e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    38   0.001
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    35   0.010
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    35   0.013
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    34   0.023
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    32   0.070
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    32   0.070
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    32   0.070
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    31   0.16 
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    30   0.38 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.38 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    29   0.50 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.5  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   2.0  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    27   2.6  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   2.6  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    27   2.6  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   3.5  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.6  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   6.1  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   6.1  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   6.1  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.1  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.1  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +2

Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLS 679
           NRVTILC+K+ GHPKGFAYIEF +   V  A+ ++ S+   RP+KV PKRTN PG+S
Sbjct: 82  NRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMS 138



 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 36/81 (44%), Positives = 46/81 (56%)
 Frame = +3

Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446
           +L  +K RV EME EA KL+ MQ ++D +         T  L     +K   D +SVYVG
Sbjct: 13  ELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVG 60

Query: 447 NVDYGATAEELEQHFHGCGSI 509
           NVDY  T EEL+ HF  CGS+
Sbjct: 61  NVDYSVTPEELQSHFASCGSV 81


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +2

Query: 530 NKYDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRPIKVMPKR 658
           +K   +PKGFAYI+F D  D+V+  + +D   F+GR + V+P +
Sbjct: 357 DKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
           I+ +K  G  KG AY+EF  +DSVQ A+A+      G P+ V      K
Sbjct: 271 IVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEK 319


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 551 KGFAYIEFGDKDSVQTAMAMDE-SLFRGRPIKVMPKRTNKP 670
           KGFAYI+F D   V  A+ ++E  +  GR +++M  ++ KP
Sbjct: 311 KGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKSTKP 351



 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 429 RSVYVGNVDYGATAEELEQHFHGCGSI 509
           R V+VGN+ + A  E L ++F  CGSI
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSI 296


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = +2

Query: 518 TILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTN 688
           T++ +K  G P+GF ++ + ++ +V+  M+       G+P++V  + T K  L  ++
Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEV-KRATPKASLRDSH 332


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 408 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
           +++   + +V+VGN+ + AT ++L   F GCG I  ++
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIR 396



 Score = 32.3 bits (70), Expect = 0.070
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 542 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
           G  KGF Y+ F D DS +  + M+     GRP ++
Sbjct: 404 GRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRL 438


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRPPRTM 706
           KGFAY++F  +D+++ A+   E    GR I +   ++N       ++P  T+
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILI---KSNTDFSGRPSKPANTL 213



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 366 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
           S P  T     SI+   +  +  ++VGN+D+  T  +L++HF   G I
Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 396 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGL 518
           +S+  + E ++ ++YVGN+D   + EE+ +HF   G +  +
Sbjct: 6   LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 551 KGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
           +GF Y+EF   D++  A+A+      GRP+++
Sbjct: 133 RGFGYVEFETADTLSAALALSGEDLMGRPVRI 164


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 261 APDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV 437
           AP +  I +    ME+   + K+ +TEV ++ S     GL   LN+ +     ADN  V
Sbjct: 52  APKIIHIASDENWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 360 MGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQY 524
           MG PP   SP+ +   + I   NR+VY+GN+    T EE+     G G +  ++Y
Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRY 353



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 426 NRSVYVGNVDYGATAEELEQHFHGCGSITGLQYY 527
           +R++Y+GN D   T E L++ F   G I  + ++
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFF 446


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 581 KDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRPP 697
           ++  ++A+A + SL  G      P   NKP  SST++PP
Sbjct: 425 ENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPP 463


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
           +V ++ N+Y G   G+ ++EF       +AM+M+     G
Sbjct: 121 KVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPG 160


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 258 EAPDLAAIKARVREMEE-EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRS 434
           E P++     + +E E+ E EKL++ Q +  K+ S G     +S ++  ++    A+N S
Sbjct: 171 EIPEVRVKTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDS 230

Query: 435 VYVGNVDYGA 464
              G    G+
Sbjct: 231 SAKGKQAAGS 240


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 303 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAEE 476
           +E  EK      + DK  S+ +PP  T     S  +K + ++R V  +VGN+   ++ E 
Sbjct: 52  DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107

Query: 477 LEQHFHGCGSITGLQ 521
           L+ HF   G +  ++
Sbjct: 108 LQLHFKRAGQVPSVR 122



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 515 VTILCNKYDGHPKGFAYIEF--GDKDSVQTAMAMDESLFRGRPIKV 646
           V I  +K  G  KG+A++EF     D +  A+    ++++ R I +
Sbjct: 121 VRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 214 YSLSR*FLPNDCCQSSLKNHHFLPFP 137
           Y   R ++P D  + SL++ HFLPFP
Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 426 NRSVYVGNVDYGATAEELEQHFHGCGSI 509
           N++VY+  +    T +E+E+ F  CG I
Sbjct: 109 NKAVYIQGLPLDVTVDEIEEVFKKCGVI 136


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
 Frame = +3

Query: 270 LAAIKARVREMEE----EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEK----IEAD 425
           L A+KA+V+E EE    E E++K++Q +  ++        L   +++S +++      +D
Sbjct: 253 LEAVKAKVKEYEEEYVPEMERMKEIQRQTKERQKEAQLSKLMKDMHVSKDKEDVGLTVSD 312

Query: 426 NRSVYVGNV-----DYGATAEELE 482
               Y G +     D G TAE+ E
Sbjct: 313 AEDEYNGELVDPDEDDGLTAEDRE 336


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 435 VYVGNVDYGATAEELEQHFHGCGSI 509
           VYVGN+ +  T E++   F  CG I
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEI 58


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 378 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
           ++ PL  +       + R +YV N+D+    +++E  F   G +  ++
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVR 787


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 408 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGL 518
           E ++A+  +VY+ N+D   T +E    F   G IT L
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 290


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 381 TSPLNMSIEEKI-EADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQY 524
           + PL   +E+ I    +R+VY  ++    T EELE      G I  ++Y
Sbjct: 483 SGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKY 531


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 411 KIEADNRSVY-VGNVDYGATAEELEQHFHGCGSITGLQYYAISMM 542
           K+  D+   Y +GN+D    A+ L   F+  G +TG+  Y   +M
Sbjct: 578 KLIVDSHVQYRLGNIDAYQLADGLHYIFNHVGQLTGMYRYKYRLM 622


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 315 EKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 485
           EK+K+++ E  +QMS+ S   L S L  ++ E I   + S+ + N        +L+Q
Sbjct: 279 EKIKKIEDERMRQMSVSSDRTLDSQL-QTVNENITRISTSIELKNTALEEEHGDLQQ 334


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 264 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSP 371
           P+LA  +AR +E   E  KLK + T  ++ +    P
Sbjct: 89  PELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKP 124


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 512 RVTILCNKYDGHPKGFAYIEFGDKD 586
           RV +  +K  G  KGFA++ + D+D
Sbjct: 230 RVYLAKDKETGRAKGFAFVSYYDRD 254


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +3

Query: 291 VREMEEEAEKLKQMQTEVDKQMSMGSPP 374
           ++++EEE EKL+ ++  +++++S    P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 542 GHPKGFAYIEFGDKDSVQTAM------AMDESLFRGRPIKVMPKRTNKPGLSSTNR 691
           G+ KG+A IE+   +  Q A+       +DE L         P+R  +P +S+ +R
Sbjct: 48  GYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLEVDFAFLEPPERAPRPSISTRSR 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,128
Number of Sequences: 5004
Number of extensions: 54528
Number of successful extensions: 200
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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