Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00039
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7964| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 44 9e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 42 7e-04
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 38 0.006
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.008
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 37 0.019
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 34 0.13
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.53
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 31 0.70
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 2.1
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 2.1
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_55988| Best HMM Match : bZIP_1 (HMM E-Value=7.4e-06) 30 2.1
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 29 2.8
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 29 2.8
SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06) 29 4.9
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 29 4.9
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13) 28 6.5
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 28 8.6
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2) 28 8.6
SB_54426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_7964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 450 VDYGATAEELEQHFHGCGSI 509
VDY ATAEELEQHFHGCGS+
Sbjct: 46 VDYSATAEELEQHFHGCGSV 65
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 509 NRVTILCNKYDGHPK 553
NRVTILC+K+ GHPK
Sbjct: 66 NRVTILCDKFSGHPK 80
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 542 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMP 652
G KG+AY+EF ++ +VQ A+AMD GRP+ + P
Sbjct: 3 GRSKGYAYVEFNNESTVQAALAMDREKMEGRPMFISP 39
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKP 670
V ++ ++ G KGF Y+ F KD+V A+ M+ + F+GR I+V P + +KP
Sbjct: 85 VRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSK-DKP 135
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 LNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
++++ +K RSV++GN+ + E L + F CG++ ++
Sbjct: 43 VDLASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVR 86
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKV 646
V ++ ++ G P+GF ++ FG K+ ++ A+ D F GRP+KV
Sbjct: 33 VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKV 77
Score = 31.5 bits (68), Expect = 0.70
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 438 YVGNVDYGATAEELEQHFHGC 500
Y+GN+ Y + LE+ FHGC
Sbjct: 8 YIGNLSYSVDEQALEEKFHGC 28
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSS 682
V I+ ++ KG AYIEF DK +V A+ + G PI VM + K L++
Sbjct: 175 VRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLSGQKLLGAPIMVMLTQAEKNRLAA 230
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 539 DGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKR 658
DG P +AYIEF + ++ +A+ ++F G+PIK R
Sbjct: 107 DGKPTRYAYIEFAETQAIVSALQYSGAIFGGKPIKSRSSR 146
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 387 PLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
PL K+E R+V+V N+D TAE L F CG I
Sbjct: 58 PLTNVDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDI 98
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKV 646
V I+ ++ G P+GF ++ FG K+ ++ A+ D GRP+KV
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKV 169
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 438 YVGNVDYGATAEELEQHFHGCGSI 509
Y+GN+ Y + LE+ FH C +
Sbjct: 7 YIGNLSYSVDEQALEEKFHDCNVV 30
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 35.5 bits (78), Expect = 0.043
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +2
Query: 503 IYNRVTILCNKYDGHPKGFAYIEFGDKDSVQTA-MAMDESLFRGRPIKVM----PKRTNK 667
+ +V ++ N+ G PKG+ Y+E+ + S TA + +D++ +GR I V P R
Sbjct: 196 VVKQVRLVTNRA-GKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTISVALSNPPTRRGP 254
Query: 668 PGLSSTNRPP 697
P PP
Sbjct: 255 PRQEHPPPPP 264
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKV 646
V ++ ++ G P+GF ++ FG +D + A+ D GRP+KV
Sbjct: 38 VKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKV 82
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKVMPKRTNK 667
V ++ ++ P+GFA++ FG K +++ A+ +D F GR +KV R+ +
Sbjct: 258 VQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSRE 309
>SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 638
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +3
Query: 258 EAPDLAAIKARVRE-MEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRS 434
E D+A ++ R+ EE + + +++DK PG+ P+ + + + +
Sbjct: 433 EEADIADLEWRIESGFNEETGHVSNIDSKLDKPAVADIAPGVNDPVTVMKIQMLNGIKPT 492
Query: 435 VYVGN-VDYGATAEELEQHFHGCGSITGLQ 521
+ GN D+ E++ HF G G +T Q
Sbjct: 493 QFTGNPADFPFFREQIRTHFEG-GFLTDAQ 521
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.9 bits (69), Expect = 0.53
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 426 NRSVYVGNVDYGATAEELEQHFHGCGSITGL 518
++ + V ++D+ T +EL ++F CG +TG+
Sbjct: 235 SKKLMVQDLDFDTTVDELREYFEKCGELTGI 265
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 414 IEADNRSVYVGNVDYGATAEELEQHFHGCGSITGLQ 521
IE ++RSV+VG + G E L+ +F G + ++
Sbjct: 75 IEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVR 110
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
+ + NK G P G A+++F K ++ A+ ++ +GR I++ K TN+
Sbjct: 196 IRFVMNK-KGQPSGCAFVDFSSKSDLEKALKRNKDYLQGRYIELF-KDTNR 244
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 429 RSVYVGNVDYGATAEELEQHFHGCGSI 509
RSV+VGN+ Y A+ E+L++ F G +
Sbjct: 25 RSVFVGNIPYEASEEQLKEIFSEVGPV 51
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 414 IEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
+E Y+GN+ Y + LE+ FH C +
Sbjct: 77 LEMAEHRCYIGNLSYSVDEQALEEKFHDCNVV 108
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 145 AENDDFLDSIDNNHLEGTN-GSMNMTDNSLGGGDEAAGEKLLTLQLSR 285
+++DD+L S ++ G+ GS++ TD + GG DE + LTLQ R
Sbjct: 255 SKSDDYLRSPSHDSGIGSAAGSVSSTDTNHGGSDEDLIDYSLTLQAMR 302
>SB_55988| Best HMM Match : bZIP_1 (HMM E-Value=7.4e-06)
Length = 150
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +3
Query: 336 TEVDKQMSMGSP--PGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
+ VD S+ SP P +TSP K+E R +D A E Q C +
Sbjct: 40 SSVDSNSSIKSPHSPKITSP------RKLEGKKRGRKPSQIDLEAKLERSRQSARECRAR 93
Query: 510 TGLQYYAISMMATQKVLPTSNLATRIVSRLQW 605
L+Y + T+K S L + ++W
Sbjct: 94 KKLRYKCLEDTVTRKESEVSKLRQELDMYVRW 125
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 14 CPICCYELYYLSRSTIS*WIWLPFQRSKVISKYIIHD 124
C IC YE Y+L R+ + WL RS+ +YII D
Sbjct: 149 CEICKYE-YHLQRTPKTFRQWLKNPRSRTERRYIIGD 184
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/66 (25%), Positives = 38/66 (57%)
Frame = +3
Query: 285 ARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGA 464
+R+RE+E+ EK+K+ TE D + M L +++E+K++ N+++ + + +
Sbjct: 792 SRIRELEDRIEKMKRKGTE-DSEKFMKEVSEKEKKL-IAMEDKLQECNKTIEELSANVRS 849
Query: 465 TAEELE 482
+ E +E
Sbjct: 850 SQETIE 855
>SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)
Length = 619
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 148 ENDDFLDSIDNNHLEGTNGSMNMTDNSLGGGDE 246
E+DD D DN+ + NG+++ DN GG D+
Sbjct: 499 ESDDDDDDDDNDEDDERNGNVDNDDNVNGGNDD 531
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 396 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
++ E + +A ++VYV AT +EL+++F G G I
Sbjct: 69 LTTEARQKAKAKTVYVKGFPKEATLDELQEYFEGKGKI 106
>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
Length = 725
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 282 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT-SPLNMSIEEK 413
K +RE EE + L Q+ + QMS G+PP T S L++S E K
Sbjct: 568 KENLREQVEELQ-LTQVAGSIQMQMSPGTPPVDTFSALSLSPEVK 611
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 160 FLDSIDNNHLEGTNGSMNMTDNSLGGGDEAAGEKL 264
FLDS + N + N M + +LGGG +G ++
Sbjct: 339 FLDSSEGNQVYLANSKMESNEAALGGGGVRSGSEI 373
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 279 IKARVREMEEEAEKLKQMQTE--VDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNV 452
+K RV+EM + A LKQ + VD+ +G + +++ I +K ++ GN
Sbjct: 1730 VKMRVKEMNDNAPVLKQFKCNILVDRNAPVGVLITTVTAIDIDISDKDQSLMYKSTFGNT 1789
Query: 453 DYGATAEELEQHFHGCGSITGLQ 521
+ + S+ GLQ
Sbjct: 1790 GKAFSLDPKTGELRTARSLRGLQ 1812
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 258 EAPDLAAIKARVREMEEEAEKLKQMQTEVDKQM 356
+A A +KARVRE+EEE L ++ + DK++
Sbjct: 82 DADGTAQLKARVRELEEE---LDELNAKYDKEL 111
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 503 IYNRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSS 682
IY R T+ + + G ++T ++ R +P+++ P T+ PGL
Sbjct: 3455 IYTRRTLSSDHENPRSSGEITRPVASSIHIRTLGRQNDKSERIQPVQIRPLATSNPGLED 3514
Query: 683 TNRP 694
+RP
Sbjct: 3515 DHRP 3518
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 533 KYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
K DG +GF ++ + DSV + + + R I+ PKR+
Sbjct: 83 KRDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIE--PKRS 123
>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
Length = 628
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 552 FGWP-SYLLHNIVTLL*IHNHESAAPAPQPWLHNQHYQHIL 433
FGWP Y H++ + IH H+ A PQ N H + L
Sbjct: 158 FGWPIGYTAHSL-PVFDIHTHKGALCYPQDVTQNLHSERHL 197
>SB_54426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 32
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 420 ADNRSVYVGNVDYGATAEELEQHFHG 497
A+N+ Y+GN+ Y + LE FHG
Sbjct: 2 AENKC-YIGNLSYSVDEQALEDKFHG 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,573,220
Number of Sequences: 59808
Number of extensions: 406892
Number of successful extensions: 1509
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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