Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00039
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 80 2e-15
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 78 5e-15
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 78 5e-15
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 76 3e-14
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 44 8e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 42 3e-04
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.003
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.020
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.020
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 35 0.046
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 34 0.081
At4g10610.1 68417.m01735 RNA-binding protein, putative 34 0.11
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.14
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 32 0.33
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 32 0.33
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 32 0.33
At1g12240.1 68414.m01416 beta-fructosidase (BFRUCT4) / beta-fruc... 32 0.33
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.43
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.57
At5g24440.1 68418.m02880 RNA-binding protein, putative 31 0.75
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.75
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 1.00
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 1.00
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 31 1.00
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 1.00
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 30 1.3
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 30 1.3
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 30 1.3
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 1.7
At4g09060.1 68417.m01493 expressed protein 30 1.7
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 1.7
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 30 1.7
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 2.3
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 29 2.3
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.3
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 3.0
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 3.0
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family... 29 3.0
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 3.0
At1g72760.1 68414.m08413 protein kinase family protein contains ... 29 3.0
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 4.0
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 29 4.0
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 4.0
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 4.0
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 4.0
At5g41320.1 68418.m05022 expressed protein 28 5.3
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 5.3
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 28 5.3
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 7.0
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 7.0
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 7.0
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 7.0
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 7.0
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 28 7.0
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 27 9.3
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 9.3
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 9.3
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 27 9.3
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 27 9.3
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 27 9.3
At1g22335.1 68414.m02794 expressed protein ; expression supporte... 27 9.3
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/81 (45%), Positives = 52/81 (64%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446
DL +K R++E+EEEA L++MQ + +K M P +S EK E D+RS+YVG
Sbjct: 53 DLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSG----GVSAAEKEEVDSRSIYVG 108
Query: 447 NVDYGATAEELEQHFHGCGSI 509
NVDY T EE++QHF CG++
Sbjct: 109 NVDYACTPEEVQQHFQSCGTV 129
Score = 68.5 bits (160), Expect = 4e-12
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL---S 679
NRVTIL +K+ G PKGFAY+EF + ++VQ ++ ++ES GR IKV KRTN PG+
Sbjct: 130 NRVTILTDKF-GQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFR 188
Query: 680 STNRPPRTMR 709
RP R MR
Sbjct: 189 GRGRPFRPMR 198
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446
+LA +K R++EMEEEA L++MQ +V+K+M P + + + E K E D RSVYVG
Sbjct: 38 ELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDP---ASMAANQEGKEEVDARSVYVG 94
Query: 447 NVDYGATAEELEQHFHGCGSI 509
NVDY T EE++ HF CG++
Sbjct: 95 NVDYACTPEEVQLHFQTCGTV 115
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL 676
NRVTIL +K+ G PKGFAY+EF + ++VQ A+ ++ES GR +KV PKRTN PG+
Sbjct: 116 NRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 170
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446
+LA +K R++EMEEEA L++MQ +V+K+M P + + + E K E D RSVYVG
Sbjct: 38 ELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDP---ASMAANQEGKEEVDARSVYVG 94
Query: 447 NVDYGATAEELEQHFHGCGSI 509
NVDY T EE++ HF CG++
Sbjct: 95 NVDYACTPEEVQLHFQTCGTV 115
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL 676
NRVTIL +K+ G PKGFAY+EF + ++VQ A+ ++ES GR +KV PKRTN PG+
Sbjct: 116 NRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 170
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/81 (43%), Positives = 57/81 (70%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 446
+L +K R++EME+EA L++MQ +V+K+M P + + N + +E+++A RSV+VG
Sbjct: 42 ELDEMKKRLKEMEDEAAALREMQAKVEKEMGAQDPASIAA--NQAGKEEVDA--RSVFVG 97
Query: 447 NVDYGATAEELEQHFHGCGSI 509
NVDY T EE++QHF CG++
Sbjct: 98 NVDYACTPEEVQQHFQTCGTV 118
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +2
Query: 509 NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL 676
+RVTIL +K+ G PKGFAY+EF + ++VQ A+ ++ES GR +KV+ KRTN PGL
Sbjct: 119 HRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGL 173
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 503 IYNRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSS 682
+ N V + NK G KG+A+++F D SV A+ +D+ + GRP+K+ ++P
Sbjct: 286 VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCALKDRPATDH 345
Query: 683 T 685
T
Sbjct: 346 T 346
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 435 VYVGNVDYGATAEELEQHFHGCGSI 509
+YVG + Y +T +E+ +F CG I
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVI 187
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRP 694
N Y H K FA++E + AM++D +F G P+KV P L++T P
Sbjct: 279 NVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRP 694
N Y H K FA++E + AM++D +F G P+KV P L++T P
Sbjct: 279 NVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRP 694
N Y H K FA++E + AM++D +F G P+KV P L++T P
Sbjct: 279 NVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
V ++ + HPKG A++ F K+SV A+A+ ++F RPIKV
Sbjct: 474 VIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSRPIKV 517
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRP 694
N Y H K FA++E + AMA+D + G P+KV P L++T P
Sbjct: 295 NVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGP 349
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTN 688
V ++ ++ KG YIEF D SV A+A+ LF G+P+ V P K L+ +N
Sbjct: 197 VRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEK-NLAQSN 253
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 405 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSIT 512
E+K+ A ++YV NV+ T EEL +HF CG+IT
Sbjct: 296 EQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTIT 331
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVM 649
I+ + G P G AYIEF K++ + A+++D + F R +K++
Sbjct: 547 IVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKIV 589
Score = 34.7 bits (76), Expect = 0.061
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 417 EADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
+A +R+++V NV +GAT + L +HF+ G +
Sbjct: 512 DASSRTIFVANVHFGATKDSLSRHFNKFGEV 542
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 515 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSST 685
V I+ ++ +G Y+EF D SV A+A+ G+P+ V P K + ST
Sbjct: 211 VRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 267
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 536 YDGHPKGFAYIEFGDK-DSVQTAMAMDESLFRGRPIKVM 649
Y G P+GFA++EF D D+ + +M+ F GR I V+
Sbjct: 83 YSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 34.3 bits (75), Expect = 0.081
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 557 FAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
FA+IEF D++ TA+ + ++ P+KV+P +T
Sbjct: 214 FAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKT 248
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 399 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
S+ ++ + R+VYV ++D T E+L F CG +
Sbjct: 163 SMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQV 199
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 557 FAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
FA+IEF D+ +TA+ + ++ P+KVMP +T
Sbjct: 191 FAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKT 225
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 539 DGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRPPR 700
DG KG+ +IEF + Q A+ M+ L GR +++ N+ G + P R
Sbjct: 420 DGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRL--DLANERGTPRNSNPGR 471
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 503 IYNRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMP 652
I RV ++C DG G A++EF + + AMA D+ R +++ P
Sbjct: 226 IQGRVQVVCRP-DGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFP 274
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 557 FAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
FA+IEF +++ + A++M ++ P+KV+P +T
Sbjct: 210 FAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKT 244
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 399 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
S+ +K + R+VYV ++D T E L F CG +
Sbjct: 159 SLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQV 195
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 536 YDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
Y G P+GF +I+F D D+ + MD L GR + V+ N+
Sbjct: 73 YTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENR 117
>At1g12240.1 68414.m01416 beta-fructosidase (BFRUCT4) /
beta-fructofuranosidase / invertase, vacuolar identical
to beta-fructosidase GI:1871503 from [Arabidopsis
thaliana]; contains Pfam profile PF00251:Glycosyl
hydrolases family 32; identical to cDNA
beta-fructosidase (vacuolar form) GI:1321683; similar to
SP:Q43857
Length = 664
Score = 32.3 bits (70), Expect = 0.33
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +3
Query: 306 EEAEKLKQMQTEVDKQMSMGS--PPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAE 473
EE + L+ + D ++ GS P + S + IE + E + S+ +GN A AE
Sbjct: 447 EEIKSLRLSSKQFDLEVGPGSVVPVDVGSAAQLDIEAEFEINKESLDKIIGNASVVAEAE 506
Query: 474 ELEQHFHGCGSITG-LQYYAISMMATQKV 557
E G ++ G L + S++AT+ +
Sbjct: 507 EFSCEKSGGSTVRGALGPFGFSVLATESL 535
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGDKDSVQTA-MAMDESLFRGRPI 640
+V ++ +K PKGFAY+ F K+ + A + ++ L GR +
Sbjct: 49 KVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 557 FAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
FA++EF D ++A+++ ++ P++V+P +T
Sbjct: 169 FAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKT 203
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 387 PLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
P S ++ ++ R+VYV ++D T E L F CG +
Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQV 154
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 524 LCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
+C Y + FA+IEF D + ++A+ ++F PI+V +T
Sbjct: 168 MCGDYKSILR-FAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKT 212
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 372 PGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
P +T N+ E + R+VYV ++D T E+L F CG +
Sbjct: 120 PWITKKTNLVQNE--DMIKRTVYVSDIDNQVTEEQLASLFLSCGQV 163
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 545 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTNRPPRT 703
H A++EF DS +A+ + +PI+V P +T P RPP T
Sbjct: 276 HSTRIAFVEFALADSALSALNCSGMVVGSQPIRVSPSKT--PVRPRITRPPST 326
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 557 FAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRT 661
FA++EF D A+++ ++ P++V+P +T
Sbjct: 182 FAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKT 216
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 396 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 509
+S ++ ++ R+VYV ++D T E L F CG +
Sbjct: 130 ISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQV 167
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRPIKVMP 652
++ ++ G +GF ++ F D+ + A++ MD GR I+V P
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRPIKVMP 652
++ ++ G +GF ++ F D+ + A++ MD GR I+V P
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKVMPKRTNKPG 673
I+ ++ G KGF ++ F D+DS++TA+ M+ GR I + + G
Sbjct: 75 IIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQARGSGTRG 126
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 536 YDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
Y G P+GF +++F D D+ MD L GR + V+ N+
Sbjct: 72 YTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENR 116
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGLSSTN 688
I+ ++ G P+GF ++ + D SV + D + G+ +++ KRT G S+N
Sbjct: 73 IMKDRKTGQPRGFGFVTYAD-SSVVDKVIQDNHIIIGKQVEI--KRTIPRGSMSSN 125
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 267 DLAAIKARVREMEEEAEKLKQ-MQTEVDKQMSMGSPPGL 380
D+ +++RV E+EEE + +KQ M+ V K S S P L
Sbjct: 569 DMQKMRSRVGELEEEFQSIKQEMKKRVSKSSSSMSSPRL 607
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV---MPKRTNKPGLSS 682
I+ ++ P+GF ++ F +DSV + G+ ++V +PK N PG++S
Sbjct: 141 IMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDAN-PGIAS 196
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 512 RVTILCNKYDGHPKGFAYIEFGD 580
+VT++ K G P+GF ++ F D
Sbjct: 34 QVTVMREKATGRPRGFGFVAFSD 56
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 518 TILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
++L + G +GFA+IEF DS AM + G+ I + +RT K
Sbjct: 46 SVLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKI-LCVQRTPK 94
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/112 (22%), Positives = 46/112 (41%)
Frame = +3
Query: 282 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 461
+ARVRE+E+E ++ + +Q+ G T+PL + + + + G
Sbjct: 143 EARVRELEDEIGRMSEEMQRFKRQIGDGEVENCTTPLEEDLLDSVLGS--LISKDETIMG 200
Query: 462 ATAEELEQHFHGCGSITGLQYYAISMMATQKVLPTSNLATRIVSRLQWLWMN 617
E H C ++ L + +TQKVL + A + + + MN
Sbjct: 201 RLFLEANIHDQSCQAL--LSKWDHLKPSTQKVLSLVSKAKKFEKEKECIIMN 250
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPG 673
I+ +++ G P+GF +I F D SV + D + G+ +++ KRT G
Sbjct: 50 IMRDRHTGQPRGFGFITFAD-PSVVDKVIEDTHVINGKQVEI--KRTIPKG 97
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPG 673
I+ +++ G P+GF +I F D SV + D + G+ +++ KRT G
Sbjct: 50 IMRDRHTGQPRGFGFITFAD-PSVVDKVIEDTHVINGKQVEI--KRTIPKG 97
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFG-DKDSVQTAMAMDESLFRGRPIKVMPKRTNK 667
N Y G P+GF ++++ +D+ + M+ + GR I ++ N+
Sbjct: 81 NYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENR 127
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 539 DGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMP 652
+G P G A++EF + + + AM D R I++ P
Sbjct: 299 EGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFP 336
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGR 634
I+ +K G KG+ ++ F D DS A+A + GR
Sbjct: 48 IITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 423 DNRSVYVGNVDYGATAEELEQHFHGCGSIT 512
D ++V N+ Y AT EEL +HF G I+
Sbjct: 259 DTGRLFVRNLPYTATEEELMEHFSTFGKIS 288
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 435 VYVGNVDYGATAEELEQHFHGCGSITGLQ 521
+YVGN+ Y T+ EL Q F G++ +Q
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQ 146
>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
protein similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1309
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 148 ENDDF--LDSIDNNHLEGTNGSMNMTDNSLG 234
E+++F +D H+EG++G N+TD +LG
Sbjct: 265 EDEEFCGIDFTSAGHVEGSSGEENLTDTTLG 295
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 482 AALSWLWIYNRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMAMDESLFRGRPIKV 646
+A+ ++W V I N G PKGFA+++F KD+ + +F RPI V
Sbjct: 352 SAVGFVW---DVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAV 404
>At1g72760.1 68414.m08413 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 697
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 273 AAIKARVREMEEEAEKLKQMQTEVDKQM 356
A I R+ +ME + +L +MQ +DKQM
Sbjct: 333 AEIAKRIAKMESQKRRLLEMQANLDKQM 360
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 506 YNRVTILCNKYDG---HPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKVMPKRTNKPGL 676
+ R T + +DG P+GF ++ + +DSV+ M + + ++V + K G+
Sbjct: 143 FGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEV-KRAIPKEGI 201
Query: 677 SSTN 688
S N
Sbjct: 202 QSNN 205
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 378 LTSPLNMSIEEKIEADNRS-VYVGNVDYGATAEELEQHFHGCGSIT 512
L S++E + S +YV N+D T ++L +HF G+IT
Sbjct: 309 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTIT 354
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRPIKV 646
N+ DG +GF ++EF + Q A+ GR I++
Sbjct: 331 NRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRL 369
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 345 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSIT 512
DK+ L+ S+ E S+YV + + T +LE HF G +T
Sbjct: 17 DKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVT 72
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 345 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSIT 512
DK+ L+ S+ E S+YV + + T +LE HF G +T
Sbjct: 47 DKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVT 102
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 282 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEK 413
K ++ +EE EK+K+ + E K+ S PG S L M I E+
Sbjct: 163 KRMTKKKKEEEEKMKKKEEEETKESEKQSKPG-ESGLEMYIPEE 205
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDK-DSVQTAMAMDESLFRGRPIKVMPKRTNKP 670
++ ++ G KG+ ++ F D+ + ++ M+ RP++ P KP
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKP 255
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 524 LCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRPI 640
+C+ H G Y++F ++D A+ A+ + GRPI
Sbjct: 100 ICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPI 139
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 548 PKGFAYIEFGDKDSVQTAM-AMDESLFRGRPIKV 646
PKGF +I F +D Q A+ A++ + GR I V
Sbjct: 106 PKGFGFITFESEDDAQKALKALNGKIVNGRLIFV 139
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
+KY G PKGF + +S + A+ F G
Sbjct: 279 DKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
+KY G PKGF + +S + A+ F G
Sbjct: 279 DKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 530 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRG 631
+KY G PKGF + +S + A+ F G
Sbjct: 279 DKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 435 VYVGNVDYGATAEELEQHFHGCGSI 509
VYVGN+D T ELE F G I
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVI 28
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 435 VYVGNVDYGATAEELEQHFHGCGSITG 515
++VGN+ + T+E L F CG + G
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVG 205
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 521 ILCNKYDGHPKGFAYIEFGDKDSVQTAMA-MDESLFRGRPIKVMPKRTNKPGL 676
++ ++ G KG+ ++ F D++ AM M+ RP+++ P NK L
Sbjct: 186 VVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGP-AANKNAL 237
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 435 VYVGNVDYGATAEELEQHFHGCGSI 509
VYVGN+D T ELE F G +
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVV 28
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 306 EEAEKLKQMQTEVDKQMSMGSPP--GLTSPLNMSIEEKIEADNRS--VYVGNVDYGATAE 473
+E + + +V + MS G T LN S +A N++ ++VG + T E
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 474 ELEQHFHGCGSIT 512
E Q+F G +T
Sbjct: 125 EFRQYFEVYGPVT 137
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/59 (18%), Positives = 28/59 (47%)
Frame = +3
Query: 306 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELE 482
+ ++++ +TE+DK+++ G I++++ + ++ GN D E E
Sbjct: 439 DNEREVREKETEIDKEVAQGDNEREVGEKETEIDKEVGQGDSDIFDGNKDMELNKEVAE 497
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 261 APDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIE 419
A ++ + +R +E+EE+ EKL+ + E++ ++ + N S+ +IE
Sbjct: 431 AAEIEVLTSRTKELEEQLEKLEAEKVELESEVKCNREEAVAQVEN-SLATEIE 482
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 261 APDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIE 419
A ++ + +R +E+EE+ EKL+ + E++ ++ + N S+ +IE
Sbjct: 397 AAEIEVLTSRTKELEEQLEKLEAEKVELESEVKCNREEAVAQVEN-SLATEIE 448
>At1g22335.1 68414.m02794 expressed protein ; expression supported
by MPSS
Length = 139
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/16 (62%), Positives = 15/16 (93%), Gaps = 1/16 (6%)
Frame = -3
Query: 483 APAPQPWLHN-QHYQH 439
AP+P+P+LH+ QHYQ+
Sbjct: 43 APSPRPYLHHQQHYQY 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,590,732
Number of Sequences: 28952
Number of extensions: 296241
Number of successful extensions: 1062
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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