Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00038
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.2  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   8.7  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   8.7  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 521 LCYSYTNDVSSL*PT*HPCGIIT*RLVSTQSKW--NKCKCNRSQLHIPHLSIVSFH 360
           +CY   N+      T  PCG I  +  +   KW  N C C   +  +PH ++ S H
Sbjct: 109 ICYDDMNENDEKQATKMPCGHIFGK--NCLQKWLENHCTCPLCRKEVPHETVGSAH 162


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 168 VKAGEVVARIDEDKLPH*QRLLYSIYQCVVRDC 266
           + A ++V+ +DE KLPH Q  +   Y  V  DC
Sbjct: 296 LSAKKIVSSVDEGKLPHQQ--IQQRYLLVKGDC 326


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 538 IKCRSLSVTPILMM--SLASSLRSTRVESSPSV**ARSQNGTSANV 407
           +  R+L  T  LM   + ASSLR+T ++    +   + +NGTS  V
Sbjct: 443 LSSRALHTTATLMKYRANASSLRTTPIDKDGQITSLQQKNGTSNQV 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,208
Number of Sequences: 5004
Number of extensions: 57670
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)