Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00038
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011) 32 0.43
SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_52234| Best HMM Match : BRF1 (HMM E-Value=0.85) 29 4.0
SB_59797| Best HMM Match : Transposase_21 (HMM E-Value=0.015) 29 5.3
SB_19383| Best HMM Match : Rpr2 (HMM E-Value=0.74) 29 5.3
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 968
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 734 KFVHLIYIAHCTIKNMSGTIQTHIWHQTKITSFTLETKDCGW-LFMEIITLRFIHIFFF 561
++V++I + + MSG +Q W I SFT W + + +TL F+ FFF
Sbjct: 699 QYVYVIELVGPKARTMSGKVQDFFWDLGDILSFTCAYFIREWRMLILCVTLFFVPFFFF 757
>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
Length = 468
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 734 KFVHLIYIAHCTIKNMSGTIQTHIWHQTKITSFTLETKDCGW-LFMEIITLRFIHIFFF 561
++V++I + + MSG +Q W + SFT W + + +TL F+ FFF
Sbjct: 186 QYVYVIELVGPKARTMSGKVQDFFWDLGDVLSFTCAYFIREWRMLILCVTLFFVPFFFF 244
>SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = -1
Query: 734 KFVHLIYIAHCTIKNMSGTIQTHIWHQTKITSFTLETKDCGWLFMEIITLRFIHIFFFNY 555
K V++ Y HC H HQ ITS + K C F+E+ +F+ + Y
Sbjct: 153 KAVYVHYSGHCL-----NLFIAHSCHQQSITSAIDKLKQCSLFFLEVQNEKFLQV-KETY 206
Query: 554 MILLYNKM*VSLCYSYTNDV 495
+ L +KM + + YT+ V
Sbjct: 207 EV-LSSKMDETFSHIYTHAV 225
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 270 IQRWRYQWRTVFGSVGLGTFNEPEF*ELVKMKRDDREMRDMKLRPVTFALVPF 428
++ ++ W V VG T +E +++ +D + DMKL P+TF VPF
Sbjct: 739 MELFKDDWNKVAEHVGTRTQDECIL-HFLRLPIEDPFLEDMKLGPLTFQPVPF 790
>SB_52234| Best HMM Match : BRF1 (HMM E-Value=0.85)
Length = 371
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = -1
Query: 335 FIKSAESDASKHRTPLVTPPLDDTIPYHALVDRIQ*ALLMR*FILINASHYFTCLNPIAR 156
++KS E+D +K ++PL +PP + H D + L R ++N+ L + R
Sbjct: 191 YLKSLEADRAKQQSPLASPPPQLSEDDHLNEDDQKNTYLSRIEKVLNSHECVKELLTLYR 250
Query: 155 SRPAILGSYVTSPLH 111
P IL S V H
Sbjct: 251 D-PTILSSKVILSFH 264
>SB_59797| Best HMM Match : Transposase_21 (HMM E-Value=0.015)
Length = 320
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 722 LIYIAHCTIKNMSGTIQTHIWHQTKITS-FTLETKDCGWLFMEIITLRFIHIFFFNYMIL 546
L YI CT++ +G + H + + ++CG + M+ + + +F ++
Sbjct: 112 LYYIKDCTVQRPNGLVSKRCSHVRYLRHPHRNKRRECGTVLMKTMRSKSGSLFLHPKLLY 171
Query: 545 LYNKM*VSL 519
YNK+ SL
Sbjct: 172 CYNKVSKSL 180
>SB_19383| Best HMM Match : Rpr2 (HMM E-Value=0.74)
Length = 335
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 722 LIYIAHCTIKNMSGTIQTHIWHQTKITS-FTLETKDCGWLFMEIITLRFIHIFFFNYMIL 546
L YI CT++ +G + H + + ++CG + M+ + + +F ++
Sbjct: 216 LYYIKDCTVQRPNGLVSKRCSHVRYLRHPHRNKRRECGTVLMKTMRSKSGSLFLHPKLLY 275
Query: 545 LYNKM*VSL 519
YNK+ SL
Sbjct: 276 CYNKVSKSL 284
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 14 YFHYLQQHKVYIRLYYHHYSY 76
Y++Y + Y YYHHY Y
Sbjct: 115 YYYYYYYYYYYYYYYYHHYYY 135
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -1
Query: 170 NPIARSRPAILGSYVTSPLH*PPTKNLPGSSSRSNGDNIDEYRLYAVEDNENT 12
+P++R + I + + SP P P S + + DN +E+R+ + + E+T
Sbjct: 475 SPVSRVKEEIPRALIPSPNTAPNMLTSPSSDTPFSEDNFEEHRMSSPQVREST 527
>SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 158 RSRP-AILGSYVTSPLH*PPTKNLPGSSSRS 69
R+RP + GS SPL+ PPT + PG++S S
Sbjct: 58 RTRPQSANGSSSHSPLNNPPTTSSPGNASSS 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,456,970
Number of Sequences: 59808
Number of extensions: 415833
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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