Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00037
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    48   8e-07
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    44   1e-05
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          42   3e-05
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    31   0.074
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   3.7  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.8  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   6.4  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    25   6.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   8.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    24   8.5  
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    24   8.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    24   8.5  

>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
 Frame = +1

Query: 1   APCSGLG--QRPQLINM-MSPKMIKSYKFLQRKLISEAVKLL----KVSGKLVYSTCTVT 159
           APCSG G   + Q +    S +   +   LQR+L+  A+  +    K  G +VYSTC++T
Sbjct: 417 APCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSIT 476

Query: 160 EDENEGLVSWVLEKFPCLK 216
            DE+E ++ + L+K P +K
Sbjct: 477 VDEDEAVIQYALKKRPNVK 495


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +1

Query: 4   PCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENE 174
           PCSG G   +   L N  S K        Q K++   ++LL+  G+LVYSTC++   ENE
Sbjct: 242 PCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENE 301

Query: 175 GLVSWVL 195
            +VS VL
Sbjct: 302 AVVSAVL 308


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = +1

Query: 4   PCSGLGQRPQLINMM---SPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENE 174
           PCSG G   + +++    S     S   LQ +++   ++LLKV G LVYSTC++   ENE
Sbjct: 272 PCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENE 331

Query: 175 GLVSWVLE 198
            +V+  L+
Sbjct: 332 AVVTAALK 339


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 31.1 bits (67), Expect = 0.074
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 31  QLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWV 192
           Q+I +++ K   +  FL R LI EA     V    + +  T+T+D ++G+++W+
Sbjct: 178 QVIKVLNQK--NTLVFLSRLLIPEAKIPQSVQEMALQAFFTLTDDNDDGIITWI 229


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 133 LVYSTCTVTEDENEGLVSWVLEKFP 207
           + YSTC+V   ENE +V  VL + P
Sbjct: 340 VTYSTCSVHRLENEQVVCEVLSQEP 364


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 251 PGPPRSGSAGISFKHGNFSSTHDTRPSFSSS 159
           P   R  S   S    + S++HD++PS SSS
Sbjct: 46  PSLYRRASTSSSSSSSSISTSHDSQPSTSSS 76


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 115  IVLQPHLSVYVVGICRILSFSVTS-CLLIEVVAPSHYK 5
            ++LQP  SVYVV     +SF + S C+L+    P  Y+
Sbjct: 1101 VLLQPINSVYVVAGVWPVSFVLLSVCILLYKGLPPFYR 1138


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 118 KVSGKLVYSTCTVTEDENEGLVSWVLEKFPCLK 216
           K+SG++V       EDE+EG+ S  + +   LK
Sbjct: 24  KLSGRIVAMKKIRLEDESEGVPSTAIREISLLK 56


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 163 DENEGLVSWVLEKFPCL 213
           DENEG   ++LEK P L
Sbjct: 860 DENEGFTRFILEKKPPL 876


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 246 PSEKWFSRYKF*TWKLF 196
           P +KWF+ YK+ + K+F
Sbjct: 327 PWKKWFNEYKYRSVKIF 343


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 390 LPFSLRLL*KTLYYLDIFHLQVVTHLCEA 304
           L F L    K  YYLD FH    TH   A
Sbjct: 23  LTFKLENQEKQCYYLDSFHTGEKTHFTYA 51


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -3

Query: 245 PPRSGSAGISFKHGNFSSTHDTRPSFSSSVTVQVL*TNLPLTFNSFTASLIS 90
           PP S S G+S  +G   ST     S S   T   + T      N+ T +  S
Sbjct: 63  PPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,431
Number of Sequences: 5004
Number of extensions: 32946
Number of successful extensions: 77
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)