Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00037
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0422 - 16941628-16941696,16942063-16942144,16942729-169428... 63 8e-11
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 46 1e-05
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 46 2e-05
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 45 3e-05
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 42 2e-04
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 42 2e-04
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 37 0.008
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 33 0.13
11_06_0130 - 20408835-20411771 28 3.6
03_01_0534 + 3996479-3997458,3997938-3998265 27 6.2
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 27 6.2
>08_02_0422 -
16941628-16941696,16942063-16942144,16942729-16942829,
16944422-16944630,16944933-16945140
Length = 222
Score = 63.3 bits (147), Expect = 8e-11
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 APCSGLGQRPQLI-NMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEG 177
APCS LG RP+L + + ++++ QR++ +AVKL+ G +VYSTCT+ ENE
Sbjct: 124 APCSALGLRPRLFAGEETLESLRNHATYQRRMFDQAVKLVHPGGVIVYSTCTINPGENEA 183
Query: 178 LVSWVLEKFPCL 213
LV + L+K+ L
Sbjct: 184 LVRYALDKYKFL 195
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 46.0 bits (104), Expect = 1e-05
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Frame = +1
Query: 1 APCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLL----KVSGKLVYSTCTVT 159
APC+G G + PQ+ + I+ F+Q++L+ A+ L+ K G +VYSTC++
Sbjct: 435 APCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVYSTCSLM 494
Query: 160 EDENEGLVSWVLEK 201
ENE ++ + L+K
Sbjct: 495 IPENEAVIDYALKK 508
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 45.6 bits (103), Expect = 2e-05
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +1
Query: 1 APCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDEN 171
APCSGLG +R L + ++ LQ +L+ A L+K G LVYSTC++ +EN
Sbjct: 493 APCSGLGVLSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEEN 552
Query: 172 EGLVSWVLEKFP 207
E ++ +++ P
Sbjct: 553 EHRIAAFVQRHP 564
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 4 PCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENE 174
PCSG G + P + + M LQ ++ + LLKV G++VYSTC++ ENE
Sbjct: 293 PCSGDGTVRKAPDMWRKWNAGMGNGLHRLQVEIAMRGIGLLKVGGRIVYSTCSMNPVENE 352
Query: 175 GLVSWVLEK 201
+V+ +L +
Sbjct: 353 AVVAEILRR 361
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +1
Query: 79 LQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWVLEK 201
LQ +L++ KLLK G LVYSTC++T +NE +V L K
Sbjct: 306 LQLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCK 346
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +1
Query: 7 CSGLGQRP-QLINMM----SPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDEN 171
C+ G + QL+ M+ P ++ ++ ++ S + LLKV G++VYSTC++ EN
Sbjct: 234 CAAPGSKTFQLLEMIHQSKEPGLLPRALSIKPRIFSSGIALLKVGGRMVYSTCSMNPVEN 293
Query: 172 EGLVSWVLEK 201
E +++ +L +
Sbjct: 294 EAVIAELLRR 303
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 36.7 bits (81), Expect = 0.008
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 61 IKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWVL 195
I+ QRK +S A+ V ++VYSTC++ + ENE +VS VL
Sbjct: 302 IRKLSAFQRKALSHALSFPSVE-RVVYSTCSIHQAENEDVVSSVL 345
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 32.7 bits (71), Expect = 0.13
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +1
Query: 79 LQRKLISEAVKLL----KVSGKLVYSTCTVTEDENEGLVSWVLEK 201
L+ +L+ A+ L+ K G +VYSTC++ ENE +V + L+K
Sbjct: 464 LKLQLLLAAIDLVDANSKTGGYIVYSTCSLMIPENEAVVDYALKK 508
>11_06_0130 - 20408835-20411771
Length = 978
Score = 27.9 bits (59), Expect = 3.6
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = -3
Query: 236 SGSAGISFKHGNFSSTHDTRPSFSSSVTVQVL*TNLPLTFNSFTASLISLR 84
SGS G +K G S H +SSV V+VL P SFTA +LR
Sbjct: 795 SGSFGSVYK-GELDSQHGES---TSSVAVKVLKLETPKAVKSFTAECEALR 841
>03_01_0534 + 3996479-3997458,3997938-3998265
Length = 435
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 13 GLGQRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGK---LVYSTCTVTE 162
GLG R +++ + M+ +Y+FL+R E + +L + G+ LV S C++ E
Sbjct: 297 GLGPRWGSMSLSAATMVTTYEFLKRLSAKEGLWVL-ICGRILLLVSSICSLLE 348
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 305 PKALHHFSVFIIKT*IRRPGPPRSGSAGISFKHG 204
PK HH S+ + T ++ P S S I KHG
Sbjct: 151 PKGRHHHSLPVNNTRVKGPAYSPSNSPSIHRKHG 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,506
Number of Sequences: 37544
Number of extensions: 198031
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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