Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00037
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)        40   6e-04
SB_6015| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=1.2e-07)          38   0.003
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)          29   2.1  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_57727| Best HMM Match : Nitro_FeMo-Co (HMM E-Value=6.4)             27   6.4  
SB_45517| Best HMM Match : Sushi (HMM E-Value=6.8)                     27   6.4  

>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 40/58 (68%)
 Frame = +1

Query: 22  QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWVL 195
           + P + N  +P++  S    Q ++++ A+++L+V G++VYSTCT++  ENE +V+ +L
Sbjct: 3   KNPLIWNKWTPQLGVSLHRTQLRILARAMEMLEVGGRIVYSTCTMSPIENESVVAEML 60


>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
          Length = 805

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +1

Query: 1   APCSGLGQRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEGL 180
           APCS LGQRPQ +  M  K ++S+  LQRK+ S    L    G   +  C ++ D + GL
Sbjct: 358 APCSALGQRPQSVVHMKLKELQSFPKLQRKIFSSVPHL----GGPGFPDCGLS-DHDRGL 412

Query: 181 V 183
           V
Sbjct: 413 V 413



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 255 PNLGLDDEHRKMVQRFGPHIDALRPADEIYRDSIGFFIA 371
           P+ GL D  R +VQRF P   ++ P  ++  D+IGFFIA
Sbjct: 401 PDCGLSDHDRGLVQRFDPTRSSVEPCCDV--DTIGFFIA 437


>SB_6015| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=1.2e-07)
          Length = 286

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = +1

Query: 1   APCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVS----GKLVYSTCTVT 159
           APCSG G   + P +    + K I     +Q++LI  A+  +       G +VYSTC++ 
Sbjct: 12  APCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVDAKSPTGGYIVYSTCSIM 71

Query: 160 EDENEGLVSWVLEK 201
            +E+E +V + L K
Sbjct: 72  VEEDEWVVDYALSK 85


>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
          Length = 727

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 255 EARPSEKWFSRYKF*TWKLF*HP*HQTFIFIFSYSTGTV 139
           E+ P + W+ RY+   W L   P   T   + +Y+T T+
Sbjct: 272 ESEPDKTWWERYQPRIWTLMEEPHSSTLAKVIAYTTLTL 310


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 172 HFHLQLQYRYCKLIYH*LSIVLQPH--LSVYVVGICRILSFSVTSCLLIEVVAPSH 11
           H H Q+ +RY +  +  L +++  H  L V ++   R+L+  + +  L+ V+  +H
Sbjct: 435 HQHPQVTHRYHQQTHKLLIVIINTHKLLIVIIINTHRLLTVIINTHKLLTVIINTH 490


>SB_57727| Best HMM Match : Nitro_FeMo-Co (HMM E-Value=6.4)
          Length = 139

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = +1

Query: 7   CSGLGQRPQLINMMSPKM-------IKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTED 165
           CSG G   +L  ++S +        ++S    Q  +++ A     V  K+ YSTC++   
Sbjct: 42  CSGSGIISRLDGLVSDEQEDDLQQRLESLADFQLSVLTHAFSFPAVK-KVAYSTCSIHSQ 100

Query: 166 ENEGLVSWVLE 198
           ENE +V   L+
Sbjct: 101 ENEDVVHKALK 111


>SB_45517| Best HMM Match : Sushi (HMM E-Value=6.8)
          Length = 216

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 251 PGPPRSGSAGISFKHGNFSSTHDTRP 174
           PG PR       + HG+++  HDT P
Sbjct: 136 PGNPRCHGEARRWSHGSYTLVHDTDP 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,540
Number of Sequences: 59808
Number of extensions: 240965
Number of successful extensions: 1153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)