Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00037
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P... 68 2e-12
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm... 51 4e-07
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 44 3e-05
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 44 3e-05
At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains P... 43 7e-05
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 42 1e-04
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to... 35 0.026
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to... 35 0.026
At5g66180.1 68418.m08337 expressed protein 31 0.32
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 1.7
At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family... 29 1.7
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family... 28 2.3
At2g07040.1 68415.m00805 leucine-rich repeat transmembrane prote... 27 4.0
At2g24580.1 68415.m02935 sarcosine oxidase family protein simila... 27 5.2
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 27 6.9
At5g19670.1 68418.m02340 exostosin family protein contains Pfam ... 26 9.1
At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing... 26 9.1
>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 599
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/69 (43%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +1
Query: 1 APCSGLGQRPQLI-NMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENEG 177
APCS LG RP+L + + ++++ + QRK++ +AV+L++V G LVYSTCT+ ENE
Sbjct: 466 APCSALGLRPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGILVYSTCTINPSENEA 525
Query: 178 LVSWVLEKF 204
+V + L+K+
Sbjct: 526 VVRYALDKY 534
>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
antitermination NusB domain-containing protein low
similarity to SP|P36929 SUN protein (FMU protein)
{Escherichia coli}; contains Pfam profiles PF01189:
NOL1/NOP2/sun family, PF01029: NusB family
Length = 523
Score = 50.8 bits (116), Expect = 4e-07
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1
Query: 1 APCSGLG---QRPQLI-NMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDE 168
APCSGLG +R L N M++ K LQ +L+ A KL+K G LVYSTC++ +E
Sbjct: 409 APCSGLGVLSKRADLRWNRKLEDMLELTK-LQDELLDSASKLVKHGGVLVYSTCSIDPEE 467
Query: 169 NEGLVSWVLEKFP 207
NEG V L + P
Sbjct: 468 NEGRVEAFLLRHP 480
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +1
Query: 1 APCSGLG--QRPQLINMMSPK-MIKSYKFLQRKLISEAVKLL----KVSGKLVYSTCTVT 159
APCSG G + + + + IK + LQ++L+ A+ ++ K G +VYSTC++
Sbjct: 438 APCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIM 497
Query: 160 EDENEGLVSWVLEK 201
ENE ++ + L+K
Sbjct: 498 VTENEAVIDYALKK 511
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 44.4 bits (100), Expect = 3e-05
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Frame = +1
Query: 1 APCSGLGQRPQLINMMSPKM---IKSYKFLQRKLISEAVKLL----KVSGKLVYSTCTVT 159
APCSG G + ++ + K IK + LQ++LI A+ L+ K G +VYSTC+V
Sbjct: 421 APCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVM 480
Query: 160 EDENEGLVSWVLE 198
ENE ++ + L+
Sbjct: 481 IPENEAVIDYALK 493
>At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 808
Score = 43.2 bits (97), Expect = 7e-05
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 4 PCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENE 174
PCSG G + P + + M LQ L + LLKV GK++YSTC++ E+E
Sbjct: 290 PCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPVEDE 349
Query: 175 GLVSWVLEK 201
+V+ +L +
Sbjct: 350 AVVAEILRR 358
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 4 PCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVSGKLVYSTCTVTEDENE 174
PCSG G + P + + LQ L + LLKV G++VYSTC++ E+E
Sbjct: 282 PCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGRMVYSTCSMNPIEDE 341
Query: 175 GLVSWVLEKFPC 210
+V+ +L + C
Sbjct: 342 AVVAEILRRCGC 353
>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 34.7 bits (76), Expect = 0.026
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 82 QRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWVL 195
Q+K ++ A+ KV ++VYSTC++ + ENE +VS VL
Sbjct: 423 QKKALAHALSFPKVE-RVVYSTCSIYQIENEDVVSSVL 459
>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 34.7 bits (76), Expect = 0.026
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 82 QRKLISEAVKLLKVSGKLVYSTCTVTEDENEGLVSWVL 195
Q+K ++ A+ KV ++VYSTC++ + ENE +VS VL
Sbjct: 423 QKKALAHALSFPKVE-RVVYSTCSIYQIENEDVVSSVL 459
>At5g66180.1 68418.m08337 expressed protein
Length = 325
Score = 31.1 bits (67), Expect = 0.32
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 73 KFLQRKLISEAVKLLKVSGKLVYSTCT 153
K LQ L+ +LLK +G LVYSTC+
Sbjct: 235 KALQLNLLRNGFRLLKEAGTLVYSTCS 261
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 254 RPGPPRSGSAGISFKHGNFSSTHDTRPSFSSSVTVQVL*TNLPLTFNSFTASL 96
+P S+ F H + SST + SSSV++ NLPL+F+ + SL
Sbjct: 11 KPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSL 63
>At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 613
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 245 PPRSGSAGISFKHGNFSSTHDTRPSFSSSVTVQVL*TNLPLTFNSFTASLIS 90
PPR SA + F++ NFS+ T + S+ +Q++ +F F+ L++
Sbjct: 102 PPRLCSAPVKFQYANFSNPRYTNTG-TGSLKLQLINQRSDFSFALFSGGLLN 152
>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
protein
Length = 883
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 231 TTSRRAWPPNLGLDDEHRKMVQRFGPHIDALRPAD 335
T SR + +GLDDE +KM+Q +D+ AD
Sbjct: 3 TGSRTSGNRGVGLDDEAKKMIQSIKEVVDSHSDAD 37
>At2g07040.1 68415.m00805 leucine-rich repeat transmembrane protein
kinase, putative
Length = 647
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 34 LINMMSPKMIKSYKFLQRKLI-SEAVKLLKV-SGKLVYSTCTVTEDENEGLVSWVLEKF 204
++ SP+ +K + ++ + V +L++ +GKL+ S V ++ E L SWV F
Sbjct: 500 MVAYKSPEYVKQSRVTKKTDVWGLGVLILEILTGKLLESFSQVDKESEEDLASWVRSSF 558
>At2g24580.1 68415.m02935 sarcosine oxidase family protein similar
to peroxisomal sarcosine oxidase from Homo sapiens
[SP|Q9P0Z9], Oryctolagus cuniculus [SP|P79371], Mus
musculus [SP|Q9D826]
Length = 416
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 189 GARKVSMFKTYTC*TTSRRAWPPNLGLDDEHRKMVQRFGPHIDALRP 329
G KV++ Y C +R W P + L++ + +RFG +D+ P
Sbjct: 274 GLIKVAVHGGYWC-DPDKRPWGPGVKLEELKEWIKERFGGMVDSEGP 319
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 399 IYYLPFSLRLL*KTLYYLDIF-HLQVVTHL 313
++YLPFS R+L TLY D H ++ +L
Sbjct: 373 LFYLPFSSRMLEVTLYVQDSHSHRNLIKYL 402
>At5g19670.1 68418.m02340 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 600
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 399 IYYLPFSLRLL*KTLY 352
+YY+PFS R+L TLY
Sbjct: 319 LYYMPFSARMLEYTLY 334
>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein contains Pfam
profile PF00638: RanBP1 domain
Length = 443
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 236 SGSAGISFKHGNFSSTHDTRPSFSSSVTVQVL*TNLPLTFNSFTASLIS 90
S S SF G F +T ++PS S + + P TF+S + + S
Sbjct: 187 SNSQTGSFSSGQFGTTKSSQPSLFSGSQAGAISNSQPGTFSSSHSGITS 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,800,436
Number of Sequences: 28952
Number of extensions: 167911
Number of successful extensions: 433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -