Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00036
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    69   5e-13
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    29   0.71 
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    27   2.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   6.6  

>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +1

Query: 121 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
           IK+LHE +GH+VT E   G  YRGKLIEAEDNMNCQM  ++VT R
Sbjct: 5   IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTAR 49



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 4/48 (8%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK----RQGNKPTAGR 383
           +DGRV+ L+ VYIRGS IRFLI+PDML+NAPMFK    R    PT GR
Sbjct: 49  RDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
 Frame = -3

Query: 229 FGNSYYPQLQLI-------SLYKLHRYLFHKSL-HDLPP 137
           + N Y+P+ + +       ++Y LHR + HKSL H LPP
Sbjct: 126 YENGYFPEKETLVEARNVGAVYALHRIMSHKSLQHALPP 164


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 LENVYIRGSKIRFLILPDMLKNAPMFKRQGNKP 371
           +E + IRG+ IR+ ILPD L    +      KP
Sbjct: 55  VETLSIRGNNIRYYILPDSLPLDTLLIDDSTKP 87


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 397 IALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSC 269
           I+LFP+  V +F   L I AF N   N KN   E  +  FS C
Sbjct: 223 ISLFPKSHVVIFHYYLGIVAFLNQ--NYKNASAELEI-AFSLC 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,841
Number of Sequences: 5004
Number of extensions: 60564
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)