Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00036
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               93   3e-19
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   3.1  
SB_33671| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   7.1  
SB_29500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 42/51 (82%), Positives = 46/51 (90%)
 Frame = +1

Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
           MSIGVPIK+LHEAEGHV+T ET  GEVYRGKLIEAEDNMNCQM+ +TVT R
Sbjct: 1   MSIGVPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTAR 51



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 39/55 (70%), Positives = 45/55 (81%), Gaps = 5/55 (9%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPT-----AGRGKSAIL 401
           +DGRV+QLE V++RGSKIRFLILPDMLKNAPMFK+   K +     AGRGKSAIL
Sbjct: 51  RDGRVSQLEQVFVRGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGKSAIL 105


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 297  NHGCTHSRAVQLGHPVCDCYESH 229
            N GCTH+  V  G PVC C + +
Sbjct: 2131 NGGCTHTCTVLDGKPVCSCPQGY 2153


>SB_33671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 343 QCSKDKGINLLQDEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASVKIFLDS 516
           QC  D   + +   G   Y        DE VEE G  +E  KV  +H   +V+ F D+
Sbjct: 71  QCILDLADSTIIPFGVTDYAVTIEKARDELVEEYGVQLEENKVTLEHFTYAVRNFSDA 128


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 379 DEGRVRYCEPKLLVEDEQVEEVGATVEAGKVGQDHLDASV 498
           D  R+ + E +L++  + VEE   T+   KVG+D L  S+
Sbjct: 213 DLKRIDHLEHELMISTKTVEEHVITINEMKVGKDQLQDSL 252


>SB_29500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 522 LYLSYISIVKELFHYHSYILIYLSEKNTNFGNRTTVCSRL 641
           LY  Y   +KELF +   I   LS+  T    RTT+C  L
Sbjct: 81  LYREYDGDIKELFGHAKIIDFGLSKLVTPGERRTTICGTL 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,696,798
Number of Sequences: 59808
Number of extensions: 417996
Number of successful extensions: 1016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)