Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00036
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 106 1e-22
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 106 1e-22
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 106 1e-22
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 106 1e-22
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 31 3.4
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 31 3.4
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 31 3.4
BC117411-1|AAI17412.1| 929|Homo sapiens receptor interacting pr... 31 3.4
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 31 3.4
BC072406-1|AAH72406.1| 929|Homo sapiens receptor interacting pr... 31 3.4
BC060870-1|AAH60870.2| 587|Homo sapiens RIPK5 protein protein. 31 3.4
BC053627-1|AAH53627.1| 884|Homo sapiens receptor interacting pr... 31 3.4
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 31 3.4
AY429674-1|AAS55390.1| 929|Homo sapiens dusty protein kinase pr... 31 3.4
AY208850-1|AAP42418.1| 929|Homo sapiens dusty protein kinase pr... 31 3.4
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 31 3.4
X05199-1|CAA28831.1| 810|Homo sapiens protein ( Human mRNA for ... 30 7.8
M74220-1|AAA36451.1| 810|Homo sapiens plasminogen protein. 30 7.8
M34276-1|AAA60113.1| 810|Homo sapiens plasminogen protein. 30 7.8
BC060513-1|AAH60513.1| 810|Homo sapiens plasminogen protein. 30 7.8
AY192161-1|AAN85555.1| 810|Homo sapiens plasminogen protein. 30 7.8
AL109933-5|CAI22908.1| 810|Homo sapiens plasminogen protein. 30 7.8
AL109933-4|CAO03489.1| 166|Homo sapiens plasminogen protein. 30 7.8
AL109933-3|CAI22907.1| 136|Homo sapiens plasminogen protein. 30 7.8
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 106 bits (254), Expect = 1e-22
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR 51
Score = 78.6 bits (185), Expect = 2e-14
Identities = 41/53 (77%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
+DGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 51 RDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 106 bits (254), Expect = 1e-22
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR 51
Score = 78.6 bits (185), Expect = 2e-14
Identities = 41/53 (77%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
+DGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 51 RDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 106 bits (254), Expect = 1e-22
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR 51
Score = 78.6 bits (185), Expect = 2e-14
Identities = 41/53 (77%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
+DGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 51 RDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 106 bits (254), Expect = 1e-22
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR 51
Score = 78.6 bits (185), Expect = 2e-14
Identities = 41/53 (77%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
Frame = +3
Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
+DGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 51 RDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 270 QLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 389
QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 54 QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 270 QLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 389
QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 54 QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 270 QLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 389
QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 54 QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC117411-1|AAI17412.1| 929|Homo sapiens receptor interacting
protein kinase 5 protein.
Length = 929
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 373 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSC-M*LLRESFGNSYYPQLQL 197
V PC+L +G N+ + NL+L ++ + + SC + LR ++G L L
Sbjct: 108 VDCLPCILILGQDCNVKCQLLNLLLGVQVLPTTKLGSEESCKLRRLRFTYGTQTRVSLAL 167
Query: 196 ISLYKL-HRYLFHKSLHDLPPREVL 125
Y+L H + H+ + P E L
Sbjct: 168 PGQYELVHTLVAHQGNWETIPEEDL 192
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 270 QLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 389
QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 54 QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC072406-1|AAH72406.1| 929|Homo sapiens receptor interacting
protein kinase 5 protein.
Length = 929
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 373 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSC-M*LLRESFGNSYYPQLQL 197
V PC+L +G N+ + NL+L ++ + + SC + LR ++G L L
Sbjct: 108 VDCLPCILILGQDCNVKCQLLNLLLGVQVLPTTKLGSEESCKLRRLRFTYGTQTRVSLAL 167
Query: 196 ISLYKL-HRYLFHKSLHDLPPREVL 125
Y+L H + H+ + P E L
Sbjct: 168 PGQYELVHTLVAHQGNWETIPEEDL 192
>BC060870-1|AAH60870.2| 587|Homo sapiens RIPK5 protein protein.
Length = 587
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 373 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSC-M*LLRESFGNSYYPQLQL 197
V PC+L +G N+ + NL+L ++ + + SC + LR ++G L L
Sbjct: 108 VDCLPCILILGQDCNVKCQLLNLLLGVQVLPTTKLGSEESCKLRRLRFTYGTQTRVSLAL 167
Query: 196 ISLYKL-HRYLFHKSLHDLPPREVL 125
Y+L H + H+ + P E L
Sbjct: 168 PGQYELVHTLVAHQGNWETIPEEDL 192
>BC053627-1|AAH53627.1| 884|Homo sapiens receptor interacting
protein kinase 5 protein.
Length = 884
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 373 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSC-M*LLRESFGNSYYPQLQL 197
V PC+L +G N+ + NL+L ++ + + SC + LR ++G L L
Sbjct: 108 VDCLPCILILGQDCNVKCQLLNLLLGVQVLPTTKLGSEESCKLRRLRFTYGTQTRVSLAL 167
Query: 196 ISLYKL-HRYLFHKSLHDLPPREVL 125
Y+L H + H+ + P E L
Sbjct: 168 PGQYELVHTLVAHQGNWETIPEEDL 192
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 270 QLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 389
QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 54 QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>AY429674-1|AAS55390.1| 929|Homo sapiens dusty protein kinase
protein.
Length = 929
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 373 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSC-M*LLRESFGNSYYPQLQL 197
V PC+L +G N+ + NL+L ++ + + SC + LR ++G L L
Sbjct: 108 VDCLPCILILGQDCNVKCQLLNLLLGVQVLPTTKLGSEESCKLRRLRFTYGTQTRVSLAL 167
Query: 196 ISLYKL-HRYLFHKSLHDLPPREVL 125
Y+L H + H+ + P E L
Sbjct: 168 PGQYELVHTLVAHQGNWETIPEEDL 192
>AY208850-1|AAP42418.1| 929|Homo sapiens dusty protein kinase
protein.
Length = 929
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 373 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSC-M*LLRESFGNSYYPQLQL 197
V PC+L +G N+ + NL+L ++ + + SC + LR ++G L L
Sbjct: 108 VDCLPCILILGQDCNVKCQLLNLLLGVQVLPTTKLGSEESCKLRRLRFTYGTQTRVSLAL 167
Query: 196 ISLYKL-HRYLFHKSLHDLPPREVL 125
Y+L H + H+ + P E L
Sbjct: 168 PGQYELVHTLVAHQGNWETIPEEDL 192
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 31.5 bits (68), Expect = 3.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +3
Query: 270 QLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 389
QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 54 QLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>X05199-1|CAA28831.1| 810|Homo sapiens protein ( Human mRNA for
plasminogen. ).
Length = 810
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
>M74220-1|AAA36451.1| 810|Homo sapiens plasminogen protein.
Length = 810
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
>M34276-1|AAA60113.1| 810|Homo sapiens plasminogen protein.
Length = 810
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
>BC060513-1|AAH60513.1| 810|Homo sapiens plasminogen protein.
Length = 810
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
>AY192161-1|AAN85555.1| 810|Homo sapiens plasminogen protein.
Length = 810
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
>AL109933-5|CAI22908.1| 810|Homo sapiens plasminogen protein.
Length = 810
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
>AL109933-4|CAO03489.1| 166|Homo sapiens plasminogen protein.
Length = 166
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 109 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 151
>AL109933-3|CAI22907.1| 136|Homo sapiens plasminogen protein.
Length = 136
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 127 VLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
VL E + ++ C+T G+ YRG + + ++ + CQ T +R
Sbjct: 92 VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,821,038
Number of Sequences: 237096
Number of extensions: 1912425
Number of successful extensions: 3988
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3988
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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