Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00036
         (753 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p pro...   104   1e-22
AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclea...   104   1e-22
AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA...   104   1e-22
AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-P...    31   1.3  
BT021227-1|AAX33375.1|  124|Drosophila melanogaster RH43429p pro...    30   2.9  

>AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p
           protein.
          Length = 151

 Score =  104 bits (249), Expect = 1e-22
 Identities = 46/51 (90%), Positives = 49/51 (96%)
 Frame = +1

Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT +TVTYR
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYR 51



 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 42/53 (79%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
           +DGR A LENVYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 51  RDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103


>AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclear
           ribonucleoproteinSm D3 protein.
          Length = 151

 Score =  104 bits (249), Expect = 1e-22
 Identities = 46/51 (90%), Positives = 49/51 (96%)
 Frame = +1

Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT +TVTYR
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYR 51



 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 42/53 (79%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
           +DGR A LENVYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 51  RDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103


>AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA
           protein.
          Length = 151

 Score =  104 bits (249), Expect = 1e-22
 Identities = 46/51 (90%), Positives = 49/51 (96%)
 Frame = +1

Query: 103 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYR 255
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT +TVTYR
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYR 51



 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 42/53 (79%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 401
           +DGR A LENVYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 51  RDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103


>AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-PA
            protein.
          Length = 3687

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +1

Query: 103  MSIGVPIKVLHEAEGHVVTCETNTGEVY 186
            +++ VP++++ E +GH +T +T+ G +Y
Sbjct: 1706 LTVSVPLQLVEEFQGHYMTMDTSCGSIY 1733


>BT021227-1|AAX33375.1|  124|Drosophila melanogaster RH43429p
           protein.
          Length = 124

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 410 SCWSRTSRWKRWGPPWRLARWVR 478
           S W R  RW+RW   WR +RW R
Sbjct: 26  SWWIRRIRWRRW---WRWSRWRR 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,105,861
Number of Sequences: 53049
Number of extensions: 604012
Number of successful extensions: 1487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)