Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00036
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    87   1e-17
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    60   2e-09
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    29   3.5  
U55854-3|AAA98012.1|   59|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    28   6.2  

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 39/55 (70%), Positives = 44/55 (80%)
 Frame = +1

Query: 106 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRMAELH 270
           S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+    VT+R    H
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSH 57



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 362
           +DGR  QL+NV+IRG+KIRF+ILPDMLKNAPMFK  G
Sbjct: 52  RDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/41 (65%), Positives = 30/41 (73%)
 Frame = +1

Query: 148 HVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRMAELH 270
           H+VT ET TGEVYRGKL EAEDNMNCQ+    VT+R    H
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSH 43



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 353
           +DGR  QL+NV+IRG+KIRF+ILPDMLKNAP FK
Sbjct: 38  RDGRSHQLDNVFIRGNKIRFMILPDMLKNAPXFK 71


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 145 GHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRMAELH 270
           G V++ ET  G VY+GKL   + N N  +T+  V      LH
Sbjct: 7   GSVISTETKDGNVYQGKLTTYDTN-NGNLTMANVIKNGLPLH 47


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 288 CTHSRAVQLGHPVCDCYESHLA 223
           C   R +QL  P CDCY + +A
Sbjct: 210 CNTGRCIQLEVPTCDCYGTEMA 231


>U55854-3|AAA98012.1|   59|Caenorhabditis elegans Hypothetical
           protein C04G6.5 protein.
          Length = 59

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 640 YYYVLKCNNKVLFQI-FCFLFWSPSICF 720
           +++  +C+  VL  I FC LFW P I +
Sbjct: 23  WWHTKECDINVLIDIIFCLLFWLPGILY 50


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 249 IQDGRVAQLENVYIRGSKIRFLILPDML 332
           +++    +L+ + IRG+ IR++ILPD L
Sbjct: 47  VKNKEPVKLDTLSIRGNNIRYIILPDPL 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,550,607
Number of Sequences: 27780
Number of extensions: 331795
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)