Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00035
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 147 9e-36
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 4e-35
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 6e-27
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 3e-26
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 95 5e-20
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 83 2e-16
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 4e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 76 3e-14
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 4e-07
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 37 0.015
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 32 0.55
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.72
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 31 0.96
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.7
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.7
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 8.9
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 147 bits (356), Expect = 9e-36
Identities = 69/109 (63%), Positives = 82/109 (75%)
Frame = +3
Query: 183 QGLHFPSCHPQFHAARRGLHQP*RTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 362
+G F PQF + TGGKSIYG KFEDENF LKHTG GVLSMAN+G +TN
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 363 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIV 509
GSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E GSQSGK SK++V
Sbjct: 242 GSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGKASKKVV 290
Score = 119 bits (287), Expect = 2e-27
Identities = 51/71 (71%), Positives = 57/71 (80%)
Frame = +1
Query: 49 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQ 228
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 229 GGDFTNHNGLG 261
GGDFT HNG G
Sbjct: 197 GGDFTKHNGTG 207
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 145 bits (351), Expect = 4e-35
Identities = 65/85 (76%), Positives = 74/85 (87%)
Frame = +3
Query: 255 TGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNV 434
TGGKSIYG KF DENF LKHTGPG+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V
Sbjct: 72 TGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSV 131
Query: 435 VEGMEVVKQIETFGSQSGKTSKRIV 509
+GM+VVK+IE GS SGKTSK++V
Sbjct: 132 KDGMDVVKKIEKVGSDSGKTSKKVV 156
Score = 113 bits (272), Expect = 1e-25
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +1
Query: 58 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 237
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 238 FTNHNGLG 261
FT +G G
Sbjct: 66 FTRGDGTG 73
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 118 bits (283), Expect = 6e-27
Identities = 54/66 (81%), Positives = 57/66 (86%)
Frame = +3
Query: 255 TGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNV 434
TGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT WLDGRHVVFG V
Sbjct: 114 TGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKV 173
Query: 435 VEGMEV 452
++GMEV
Sbjct: 174 LKGMEV 179
Score = 57.2 bits (132), Expect = 1e-08
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 18/88 (20%)
Frame = +1
Query: 52 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 177
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 178 GYKGSIFHRVIPNFMLQGGDFTNHNGLG 261
GYK SIFHRVI +FM+QGGDFT +G G
Sbjct: 88 GYKNSIFHRVIQDFMIQGGDFTKGDGTG 115
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 116 bits (278), Expect = 3e-26
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = +3
Query: 255 TGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNV 434
TGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG V
Sbjct: 95 TGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKV 154
Query: 435 VEGMEVVKQIE 467
+EGM+VV++IE
Sbjct: 155 LEGMDVVRRIE 165
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/70 (55%), Positives = 50/70 (71%)
Frame = +1
Query: 52 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 231
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 232 GDFTNHNGLG 261
GDFTN +G G
Sbjct: 87 GDFTNKDGTG 96
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 95.1 bits (226), Expect = 5e-20
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 TGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 431
TGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VFG
Sbjct: 4 TGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGR 63
Query: 432 VVEGMEVVKQI 464
VV+GM+V +QI
Sbjct: 64 VVKGMDVAQQI 74
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = +3
Query: 336 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 467
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE 44
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = +3
Query: 258 GGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 437
GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG V+
Sbjct: 48 GGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVI 107
Query: 438 EGMEVVKQIE 467
EG+ V+ +E
Sbjct: 108 EGLNVLDVLE 117
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 4e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +3
Query: 309 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 467
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3
Query: 327 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 464
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 76.2 bits (179), Expect = 3e-14
Identities = 40/72 (55%), Positives = 49/72 (68%)
Frame = +3
Query: 255 TGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNV 434
TGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG+V
Sbjct: 27 TGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHV 76
Query: 435 VEGMEVVKQIET 470
++G E+V+QIE+
Sbjct: 77 IQGEELVRQIES 88
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +1
Query: 91 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 204
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1
Query: 88 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDF 240
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM+QGG F
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF 79
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +3
Query: 312 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 464
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 312 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 428
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 88 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVI 210
+G I IEL TPK C NF LC +G+ Y +IFHR++
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +3
Query: 414 HVVFGNVVEGMEVVKQIET 470
HVVFG+V++G E+V+QIE+
Sbjct: 3 HVVFGHVIQGEELVRQIES 21
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 454 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 317
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 427 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 317
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 457 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 317
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 31.1 bits (67), Expect = 0.96
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -1
Query: 488 PRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARS 318
PR A +GL D F+ K+ MS I+PGG D +EE T S G + E A+S
Sbjct: 443 PRRAGEGLPHSDFKSGFSY--KEYMSGIRPGGPDMEEEEKATPQ-SNGDASDEKAQS 496
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 201 SCHPQFHAARRGLHQP*RTGGKSIYGNKFEDE 296
S HP H RG + P R+ +SI KF+DE
Sbjct: 8 SQHPMEHLESRGHNTPRRSSSRSIKRKKFDDE 39
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 82 APLGKIVIELRSDVTPKTCENFRALCTG 165
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -2
Query: 430 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 317
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 430 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 317
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -2
Query: 475 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 296
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 295 SS 290
+S
Sbjct: 145 TS 146
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 161 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 30
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 487 PDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 317
P P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,740,750
Number of Sequences: 59808
Number of extensions: 535681
Number of successful extensions: 1526
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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