Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00034
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.0  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   5.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.3  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 28  CARAERVSRRDPGTENSIQYFLDRFYMSRISIRMLINQHTLLFGEQLGGKQAS 186
           C  A  + +R P     +   L  F   + +   L+ +  LLF EQ+G +Q +
Sbjct: 310 CMSASNLIQRTPNICYKLLSNLGIF--PKTTNEQLLRKELLLFAEQMGQRQVA 360


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve
          cord defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 13 DDGPGCARAERVSRRDPGTENS 78
          D+ P  A    VS RDP  +NS
Sbjct: 1  DNLPSSASNPAVSERDPDEDNS 22


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 595 DSHTVPLAGYGYGLPNLASVRAVFPRRP 678
           ++HT P   +  G P+       +P RP
Sbjct: 51  NAHTGPTGTHDAGFPSPRGALGAYPFRP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,778
Number of Sequences: 336
Number of extensions: 3640
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)