Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00034
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 64 1e-11
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 29 0.47
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 28 1.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.9
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 2.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.5
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 7.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 7.7
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 64.5 bits (150), Expect = 1e-11
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Frame = +3
Query: 264 AYENARFLCDRYY--LASPELEVLQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVME 437
A ENA+++C Y +PE++++ D SL M YV SHL H +FE+ KN++RA +E
Sbjct: 253 AAENAKYICRLAYGLFEAPEIQIICD--PSLEMM---YVESHLNHAVFEILKNSLRATVE 307
Query: 438 NHGTAP---PPIQVNLVNGKEDISVKI 509
HG PPI+V + G+EDI++KI
Sbjct: 308 FHGVDSDFFPPIKVIVAKGQEDITIKI 334
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 52 RRDPGTENSIQYFLDRFYMSRISIRMLINQHTLLFGE 162
R+ +NSIQ FLDRFYMSRI IRML+ Q+ L E
Sbjct: 194 RKTNQIDNSIQIFLDRFYMSRIGIRMLLGQYIALVSE 230
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Frame = +1
Query: 553 FKYMYSTAPQPSKSDSH-------TVPLAGYGYGLP 639
+ YM++TA D H T P+AG+G+GLP
Sbjct: 350 WSYMFTTASPTLTDDPHDIVSANSTTPMAGFGFGLP 385
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 632 GCLISRLYARYFHGDL 679
G ++RLY RYF GDL
Sbjct: 383 GLPLARLYTRYFGGDL 398
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.47
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 474 LVNGKEDISVKILIAAAASRAVSELLFQVHVQHGAAALQVRLAHGAASGLRIRAA 638
+VNGK+D + L +A +S ++ + + A A +L +G SG+R A
Sbjct: 43 IVNGKQDFTTVALFSADSSTMNCDVCRLIEPEFKALANSYKLKYGLDSGIRFTYA 97
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 468 VNLVNGKEDISVKILIAAAASRAVSELLFQVHVQHGAAALQVRLAHGA 611
VN V GKED+S+ ++ + AV+ L + Q A AL ++ A
Sbjct: 239 VNFVTGKEDVSINLVALSRLLPAVASELLLLFDQVTAKALYPKIVKPA 286
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 562 MYSTAPQPSKSDSHTVPLAGYGYGLPN 642
MYS++ Q S+S S+T AG G+G P+
Sbjct: 870 MYSSSRQSSRSGSNTHSHAGPGFGGPS 896
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 175 KQASVNGIGNGGRHIGSIDPACDVVAVLGTLTRTQGSSATD 297
KQASV IG+GG +G I A + ++G Q S A D
Sbjct: 761 KQASVCCIGDGGNDVGMIQVANVGIGIVGK-EGQQASLAAD 800
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/83 (25%), Positives = 30/83 (36%)
Frame = +1
Query: 256 LGTLTRTQGSSATDTT*PHQSWRYCRTECRVCARCP*CMCPRTSTTCCLNYSRTP*EPSW 435
L T T +S T+ P S T C P P TST T +
Sbjct: 445 LATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPY 504
Query: 436 RTTALPRRRYKLTSSTGKRTYPL 504
+T + Y ++SST + P+
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPV 527
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 448 LPRRRYKLTSSTGKRTYPLRF*S---RRRHPAQCRSFCFKYMYSTAPQPSKSDSHTVPLA 618
LP+ RY LT + YP R S ++ RS+ + T QP+ + + P++
Sbjct: 57 LPKSRYALTKRSSSSEYPRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTVTGNQDKPIS 116
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 282 FLCDRY--YLASPELEVLQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVMEN 440
F DR+ YLA + +++ VS + + ++YVP+ +F ++K V +N
Sbjct: 428 FALDRFGDYLADQVVAPIRESVSQVLGVALIYVPN---DSVFSMYKVLHSLVFQN 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,518
Number of Sequences: 5004
Number of extensions: 57053
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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