Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00034
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13) 45 5e-05
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 38 0.010
SB_40542| Best HMM Match : B3_4 (HMM E-Value=0) 32 0.49
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2) 28 6.1
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08) 28 8.0
SB_48897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064) 28 8.0
SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)
Length = 295
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1
Query: 553 FKYMYSTAPQPSKSDSHTVPLAGYGYGLP 639
F+Y YSTAP+PS S + PLAGYGYGLP
Sbjct: 170 FEYHYSTAPEPSTSGT-VAPLAGYGYGLP 197
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Frame = +3
Query: 411 KNAMRAVMENHGTAP--PPIQVNLVNGKEDISVKI 509
+NAMRAV EN+ T+ PPIQV + G+ED+++KI
Sbjct: 120 ENAMRAVTENYSTSVDMPPIQVMITKGREDLTIKI 154
Score = 31.1 bits (67), Expect = 0.86
Identities = 21/57 (36%), Positives = 24/57 (42%)
Frame = +2
Query: 509 SDRGGGIPRSVGASVXXXXXXXXXXXXXXXXXXXXXXVTDTGCLISRLYARYFHGDL 679
SD+GGGIPRS V G +SRLYA+YF GDL
Sbjct: 155 SDKGGGIPRSKIDEVFEYHYSTAPEPSTSGTVAPLAGY-GYGLPLSRLYAKYFDGDL 210
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 285 LCDRYYLASPELEVLQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVMENHG---TAP 455
+C+ Y +P + ++ ++ P Y+PS L ++L EL KNAMRA +E HG
Sbjct: 3 ICEHLYGVAPGV-IVNGHTKAMFP----YIPSPLEYILQELIKNAMRASVEYHGKQLMEV 57
Query: 456 PPIQVNLVNGKEDISVKI 509
P I V D V+I
Sbjct: 58 PNIVVTTCTNDTDFYVRI 75
>SB_40542| Best HMM Match : B3_4 (HMM E-Value=0)
Length = 325
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 LTCSDDGPGCARAERVSRRDPG-TENSIQYFLDRFYMSRISIRMLINQHTL 150
+ C DGP C A +D G +EN+ FL+ Y + +S+R +H L
Sbjct: 193 MICHADGPMCI-AGVFGGKDSGVSENTTSIFLESAYFNPVSVRKTAKRHAL 242
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 417 AMRAVMENHGTAPPPIQVNLVNGKEDISVKILIAAAASRA----VSELLFQVHVQHGAAA 584
A+ VM+ H T PP + + G+E+I I +++ V EL+ +
Sbjct: 495 ALITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERTKSLGPDVPELIILPVYSALPSE 554
Query: 585 LQVRLAHGAASGLRIRAA*SRVCTRGISTA 674
+Q R+ A G R RA+ S++C G +A
Sbjct: 555 MQTRIFDPAPPGSRKRASHSKLCHGGHGSA 584
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -3
Query: 340 TPSCSTSSSGEAK*YLSQRNLAFS*ASLTRPRRHRPGLWSRCDGHHCRS 194
T C +++SG SQ N AFS S TR RHR G + DG H S
Sbjct: 179 TRHCDSATSGRTTECSSQSN-AFSEKSKTR--RHRKGSNKKHDGSHTES 224
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 435 ENHGTAPPPIQVNLVNGKEDISVKILIAAA---ASRAVSELLFQVHVQHGAAALQVRLAH 605
EN +A PP+ ++ G+E+I + +L A A S A L + + +++ L H
Sbjct: 170 ENPRSADPPLHISCKTGREEIVIMLLEAGADINQSGANGTALHEAALYGKTDVVKILLDH 229
Query: 606 GA 611
GA
Sbjct: 230 GA 231
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = +3
Query: 399 FELFKNAMRAVMENHGTAPPPIQVNLVNGKEDISVKILIAAAASRAVSELLFQVHVQHGA 578
F+L K+++++++E +GT+ + + K + L+ V Q G+
Sbjct: 25 FQLMKDSIQSIIERYGTSTLHYGLIVYGAKASTEFSFADKLQEKNRLLSLMGSVRRQSGS 84
Query: 579 AALQVRLAHGA 611
AL+ LA A
Sbjct: 85 PALETALAEAA 95
>SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2)
Length = 391
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 288 CDRYYLASPELEVLQDGVSSLRPMP----IVYVPSHLYHMLFELFKNAMRAVMENHGTAP 455
C + P L+ + S P P +++ P +LY ++ + ++ HG P
Sbjct: 303 CGTAGIVDPYLDSEMTKILSFPPPPSNGLVLHTPENLYKIVRYYHERNIQVATHAHGDRP 362
Query: 456 PPIQ 467
PPI+
Sbjct: 363 PPIK 366
>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
Length = 493
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 328 CRTECRVCARCP*CMCPRTSTTCCL 402
C +C +C + PR TTCCL
Sbjct: 199 CGLQCVAVTQCVISVSPRQDTTCCL 223
>SB_48897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 248 TTSQAGSMEPM*RPPLPIPLTDACLPPSCSPNN 150
T +Q G + P P P PL C PP SP+N
Sbjct: 26 TMAQDGELIPHLSPCTP-PLLSPCTPPHLSPSN 57
>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
Length = 265
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 317 AGGTAG-RSVESAPDAHSVCALAPLPHAV*TIQERHESRHGEPRHCPAADTS*PRQRERG 493
+G +G R E HS +++P P R G+ RH ++ S PR R R
Sbjct: 151 SGSQSGDRQRERRLHKHSSPSISPSPPRRQKYSNGQSDRKGKHRHRDSSSPSPPRHRSRS 210
Query: 494 HIR*DSDRGG 523
R + R G
Sbjct: 211 PFRNGNKRKG 220
>SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 50 HEGIPERRTPYNTSWTD 100
H+GIPE R P+N+ TD
Sbjct: 406 HQGIPELREPFNSFMTD 422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,552,574
Number of Sequences: 59808
Number of extensions: 518609
Number of successful extensions: 1351
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -