Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00033
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   1.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   2.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   4.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   6.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   8.3  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    20   8.3  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 34  NFQLKYVSAETTLKESEKQVKEIEQLNKQLSETKNKNELLQHEIDAL-KDALRQMK 198
           N Q++  +A   + ++ +  K I +  ++     + NEL    +DA+ KD  R  K
Sbjct: 19  NNQIEMAAATKRVSDNRRSNKPIMEKRRRARINNSLNELKTLILDAMKKDPARHSK 74


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 110 NCSISLTCFSDSFNVVS 60
           +CS+  TC SD   +VS
Sbjct: 454 DCSVYYTCVSDGSKLVS 470


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 40  QLKYVSAETTLKESEKQVK 96
           +L+ +   T L+ SEKQVK
Sbjct: 144 RLRRIEIATCLRLSEKQVK 162


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 230 HLSTTLKSSPTIQS 271
           H+ST   SSPTI S
Sbjct: 194 HVSTGSTSSPTIAS 207


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 110 NCSISLTCFSDSFNVVSADTYFSWKLSRS 24
           NC       + +F V S DT  +W  + S
Sbjct: 126 NCPEQKNTVTVTFTVQSDDTTLNWGTNES 154


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -2

Query: 344 FLIETNPFLLFDLILV 297
           F++  +P+++FDL+ V
Sbjct: 260 FILCWSPYIIFDLLQV 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,059
Number of Sequences: 336
Number of extensions: 944
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)