Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00033
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    26   0.15 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    26   0.15 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   0.19 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    20   7.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    20   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   7.3  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 285 NNLANKYEVEQKERVRLDQE 344
           ++LANKY+ ++K RV+ ++E
Sbjct: 103 DSLANKYDPDKKYRVKFEEE 122


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 285 NNLANKYEVEQKERVRLDQE 344
           ++LANKY+ ++K RV+ ++E
Sbjct: 103 DSLANKYDPDKKYRVKFEEE 122


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.19
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 285 NNLANKYEVEQKERVRLDQE 344
           ++LANKY+ ++K RV+ ++E
Sbjct: 103 DSLANKYDPDKKFRVKFEEE 122


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  VSAETTLKESEKQVKEIEQLNKQLSETK 135
           V+AET   +S +     EQLN  LS+ +
Sbjct: 19  VTAETEEGQSGRSRVSDEQLNMALSDQR 46


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  VSAETTLKESEKQVKEIEQLNKQLSETK 135
           V+AET   +S +     EQLN  LS+ +
Sbjct: 19  VTAETEEGQSGRSRVSDEQLNMALSDQR 46


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 133  KNKNELLQHEIDALKD 180
            K  NE+LQ +++ALK+
Sbjct: 1018 KTLNEVLQADMNALKN 1033


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,541
Number of Sequences: 438
Number of extensions: 1270
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)