Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00032
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   1.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   9.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 435 AARGKPGYLLPFFC 476
           A  G PG  LPFFC
Sbjct: 115 APTGHPGAALPFFC 128


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 435 AARGKPGYLLPFFC 476
           A  G PG  LPFFC
Sbjct: 7   APTGHPGAALPFFC 20


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 318 PLSNVETRPSPYSQHASHPSDHS 386
           P +  + RP+P S++A  P+D++
Sbjct: 252 PATKSKPRPAPASRNAPEPADNN 274


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 155 PVRTCRQKQHSHS 117
           P+ TC +KQH  S
Sbjct: 240 PITTCNKKQHLES 252


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 331 TFDSGVGSTSPVRPTLLHELTGDDSRPVHPAIED 230
           T  +G    SP +  L+H L    +   HP+ ED
Sbjct: 303 TLCNGSKGISPEQEELIHRLVYFQNEYEHPSEED 336


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 351 YSQHASHPSDHSLIY 395
           +SQH ++PSD+   Y
Sbjct: 11  HSQHGTYPSDNYYNY 25


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 322 SGVGSTSPVRPTLLHELTGDDSRPVHPA 239
           S VGS+SP    +  +   ++   +HP+
Sbjct: 149 SSVGSSSPFDKLIEEDSRSNEDTSLHPS 176


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 351 YSQHASHPSDHSLIY 395
           +SQH ++PSD+   Y
Sbjct: 11  HSQHGTYPSDNYYNY 25


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 351 YSQHASHPSDHSLIY 395
           +SQH ++PSD+   Y
Sbjct: 11  HSQHGTYPSDNYYNY 25


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 322 SGVGSTSPVRPTLLHELTGDDSRPVHPA 239
           S VGS+SP    +  +   ++   +HP+
Sbjct: 97  SSVGSSSPFDKLIEEDSRSNEDTSLHPS 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 322 SGVGSTSPVRPTLLHELTGDDSRPVHPA 239
           S VGS+SP    +  +   ++   +HP+
Sbjct: 280 SSVGSSSPFDKLIEEDSRSNEDTSLHPS 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,673
Number of Sequences: 336
Number of extensions: 3420
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)