Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00032
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   4.3  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   7.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.5  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   10.0 
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    25   10.0 
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   10.0 

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +3

Query: 177 APFPAPSGTRSFSSDCA*SSIAG*TGRESSPVSSWSNVGRTGDVLPTPL-----SNVETR 341
           A FP  S   SF  +    S+A  T    S  SS SN+  T  + PTP      +N    
Sbjct: 251 AAFPLLSNATSFFGENLTPSLAASTASTGSTDSSGSNIANT-LIAPTPTISPPSANTVGN 309

Query: 342 PSP 350
           PSP
Sbjct: 310 PSP 312


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 340 RVSTFDSGVGSTSPVRPTLLHELTGDDSRPVHPAIEDHAQSLLKLLVPLGAGKGAMI 170
           + S  ++G   T  +R    H+L  +  R +H A+   +Q++ +  V LG G   M+
Sbjct: 357 KFSGVEAGEACTIVLRGAT-HQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEML 412


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 255 RESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 374
           R  SP+S  S+      VLP   S  + +P  Y+  +++P
Sbjct: 109 RNQSPISRKSSCVTCSTVLPLEFSVPDVQPRLYTNSSTNP 148


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 195 SGTRSFSSDCA*SSIAG*TGRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 374
           S + S  S  + SS    +   SS  S+ S+   T     T  S+  +RP+  S H+S  
Sbjct: 344 SSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSL 403

Query: 375 SDH 383
           S H
Sbjct: 404 SSH 406


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = -3

Query: 352 YGLGRVSTFDSGVGSTSPVRPTLLHELTGDDSRPVHPAIEDHAQSLLKLLVPLGAGKGAM 173
           Y L  VS F         + P   + LT + + P     ED      K+LV         
Sbjct: 125 YALAVVSMFKCSTADPG-ILPRNAYSLTYNPAHPWSVIPEDR-----KVLVGSTRSDSVF 178

Query: 172 IPE*LCQSEHVGRSSIATHCHV 107
           +    C + H+ R   A+HCH+
Sbjct: 179 VNTVYCHTCHLYRPPRASHCHL 200


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 152 VRTCRQKQHSHSLPRSLPNLGWNLNIALVVK 60
           V  C++K H  +LP  L N  + L+  LV++
Sbjct: 548 VIVCKRKNHKENLPAQLANGIYRLDDTLVLE 578


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 427 IIISVRAMVPRYIRLWSLGC 368
           ++  ++ + P YIR WS+ C
Sbjct: 127 VLTILKYLAPAYIRQWSISC 146


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 430 TAPLVGNRAICCPSSVFRSSTLLSPFYGN 516
           +AP +  R I  P + FRS  L+  F G+
Sbjct: 290 SAPDIAGRGIANPVATFRSVALMLEFMGH 318


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 208 VLAAIVRDPRLLDELDVSHPQ*VRGAMWGALEMYCPHH 321
           V  A+V DP+L+D+L   +P+ + G +    + +   H
Sbjct: 46  VRIALVADPQLVDDLTYDYPRPLIGIVKWISDQFLRRH 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,312
Number of Sequences: 5004
Number of extensions: 55666
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)